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Nest-type fluorescence PCR detection primers, probe composition and kit for donkey and pig-sourced ingredients in colla corii asini and detection method and application

A technology for detecting primers and porcine origin, applied in biochemical equipment and methods, recombinant DNA technology, microbial measurement/inspection, etc., can solve problems such as easy contamination, linear genomic DNA fragmentation, and difficulty in successfully amplifying large fragments. Achieve the effect of improving detection sensitivity, high degree of DNA damage, and improving amplification efficiency

Inactive Publication Date: 2016-07-06
BIOTECH RES CENT SHANDONG ACADEMY OF AGRI SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, there are also disadvantages such as long time consumption, easy contamination and false positives, that is, the whole process takes about 5 hours from the beginning of PCR amplification, and the test results require electrophoresis and gel imaging systems to see the results, multiple tube opening operations, and the possibility of cross-contamination Big
[0005] In addition, because donkey-hide gelatin undergoes multiple processes of high-temperature decoction, the linear genomic DNA is broken into small fragments and even degraded. Although the tolerance of circular mitochondrial DNA to high temperature is stronger than that of linear genomic DNA, after intensive processing DNA will be damaged to varying degrees. How to solve the problem of degrading DNA has become a major bottleneck in detecting the authenticity of donkey-hide gelatin based on DNA detection technology.
Chinese patent (CN104988231.A) uses semi-nested PCR technology to identify the authenticity of donkey-hide gelatin, and the amplified fragment is about 700bp. For the deeply processed gelatinous traditional Chinese medicine, the DNA has been highly damaged, and it is difficult to successfully amplify large fragments. Two rounds of PCR amplification is not only time-consuming, but the operation of opening the tube can easily cause cross-contamination, resulting in false positives and low accuracy of the results. Therefore, the traditional PCR detection method can no longer meet the current requirements for authenticity detection of donkey-hide gelatin.

Method used

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  • Nest-type fluorescence PCR detection primers, probe composition and kit for donkey and pig-sourced ingredients in colla corii asini and detection method and application
  • Nest-type fluorescence PCR detection primers, probe composition and kit for donkey and pig-sourced ingredients in colla corii asini and detection method and application
  • Nest-type fluorescence PCR detection primers, probe composition and kit for donkey and pig-sourced ingredients in colla corii asini and detection method and application

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Experimental program
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Effect test

Embodiment 1

[0079] DNA extraction based on donkey-hide gelatin samples: using the method disclosed in the patent 201410317118.7 (a kit for quickly extracting DNA from donkey-hide gelatin and its extraction method), the steps will not be repeated, and the purity of the extracted genomic DNA is determined by ultraviolet spectrophotometer and concentration. Determination of OD 260 / OD 280 The values ​​are all about 1.8-1.9, and the concentration is above 10ng / μl, indicating that the DNA is of high purity and moderate concentration, which meets the requirements of PCR amplification. .

[0080] 1. Selection of target genes and design of primers: Compared with the genome, the copy number of mitochondria in tissues is higher, and the degree of damage of donkey-hide gelatin after deep processing is relatively small, so the mitochondrial 16SrDNA gene is preferred. The external primers and internal primers are designed for donkeys and pigs, and the amplified fragments are small, making it easier...

Embodiment 2

[0085] Example 2 Kit Specificity Verification

[0086]Using the detection kit provided by the present invention, the genomic DNA is extracted from animal skins or fresh tissues such as cattle, pigs, horses, donkeys, camels, yaks, goats, sheep, rabbits, fish, chickens, ducks, minks and foxes as templates, Perform multiple nested real-time fluorescent PCR detection according to the above method to verify the specificity of this kit. The test results are shown in Table 3. Only donkey and pig genomic DNA were detected, and the rest of the animal-derived DNA was not detected, indicating that the detection method of this kit has good specificity.

[0087] Table 3 specificity verification

[0088]

[0089]

Embodiment 3

[0090] Embodiment 3 Sensitivity experiment

[0091] Quantify donkey and pig genomic DNA to 5×10 -2 ng / μl, 5pg / μl and 0.5pg / μl, 0.05pg / μl, 0.005pg / μl were added to each PCR reaction with different concentrations of donkey and pig DNA as templates, and the amount added was 2μl, that is, the DNA content was 0.1ng , 0.01ng, 1pg, 0.1pg, 0.01pg, amplified according to the above PCR system and detection method, the results are shown in Figure 4 and Figure 5 , as can be seen from the figure, the detection limit of the present invention is 0.1pg, and the detection sensitivity reaches the picogram level, which is 1000 times higher than other detection sensitivities.

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Abstract

The invention provides nest-type fluorescence PCR detection primers, a probe composition and a kit for donkey and pig-sourced ingredients in colla corii asini and a detection method and application, and relates to the technical field of molecular biology. By means of the primers, the probe composition and the multiple nest-type fluorescence PCR detection kit, the donkey and pig-sourced ingredients in colla corii asini can be rapidly identified. For trace DNA or degraded DNA in colla corii asini, a nest-type PCR and small fragment amplification technology is adopted, the probability for effectively identifying target points by means of the primers and a probe is greatly increased, and therefore the detection accuracy and sensitivity are greatly improved; two steps of PCR amplification are conducted in a same system, and the advantages that closed tube operation is achieved, the contamination rate is low, the detection sensitivity is high, the specificity is good, the accuracy is high, and the flux is large are achieved.

Description

technical field [0001] The present invention relates to the technical field of animal-derived detection of gelatinous traditional Chinese medicine, in particular to a nested fluorescent PCR detection primer, probe composition, kit, detection method and application of donkey-hide gelatin and pig-derived origin, belonging to molecular biology technology field. Background technique [0002] Donkey-hide gelatin is a solid gelatin made from the donkey skin of the equine animal, which is boiled and concentrated. It is originally produced in the Pandong-E region of Shandong Province. It was first recorded in "Shen Nong's Materia Medica". , has a history of nearly three thousand years. Donkey-hide gelatin blood-tonifying holy medicine, tastes sweet and flat, enters the lung, liver, and kidney meridian, has the functions of nourishing blood and stopping bleeding, nourishing yin and moistening dryness, etc. Power, applicable to a wide range of people. Li Shizhen's "Compendium of Ma...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6848C12Q1/6888C12Q2600/16C12Q2531/113C12Q2537/143C12Q2549/119C12Q2561/101
Inventor 步迅张全芳刘艳艳范阳阳
Owner BIOTECH RES CENT SHANDONG ACADEMY OF AGRI SCI
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