Method, special primer and probe for identifying DNA (deoxyribonucleic acid) of siam rosewood payung among rosewood
A technology of Dalbergia cochinchinensis and probes, which is applied in the field of primers and probes, can solve the problems of similar material structure and difficulty in wood identification accuracy, and achieve the effects of intuitive analysis, easy unification of standards, and improved sensitivity
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Embodiment 1
[0031] Example 1 detects primers, probes and detection kits of Dalbergia cochinchinensis
[0032] Use NCBI and other resource information to find out the gene difference sites between Dalbergia cochinchinensis and other woods, screen out a pair of specific amplification primers (JZHTPrimer-F and JZHTPrimer-R), and set A specific probe (JZHTPrimerProbe) was determined. The amplification primer pair and the probe sequence are respectively:
[0033] JZHTPrimer-F: 5'-CATCGAGTCTTTGAACGCAAGT-3'
[0034] JZHTPrimer-R: 5'-CGAATCCACCACGAACCC-3'
[0035] JZHTPrimerProbe: 5'-VIC-CAACCCGTGCGCCT-MGB-3'.
[0036] A kit for detecting Dalbergia cochinchinensis. The kit includes sample DNA extraction reagents, qPCR amplification reaction solution, positive control substance, negative control substance and blank control substance.
[0037] Wherein the qPCR amplification reaction system is: a 20 μl system comprising:
[0038] SYBRPrmixTaqⅡ (2×) 10 μl
[0039] ROX Reference Dye II (50×) 0.4...
Embodiment 2
[0051] Embodiment 2: the identification method of real-time fluorescent PCR
[0052] (1) Pretreatment of wood samples:
[0053] Thoroughly disinfect the wood surface with 75% ethanol, rinse with sterile water and wipe the wood dry. Cut off the surface of the wood to be tested to avoid contamination by other organizations. Take a certain amount of wood samples, add liquid nitrogen and quartz sand to a pre-cooled mortar and grind them into powder for later use. When not used immediately, the sample DNA solution was stored at -20°C until use.
[0054] (2) DNA extraction of wood samples:
[0055] The total DNA of the wood pretreated in step (1) was extracted using the Plant Genome Extraction Kit (PlantGenomicDNAKit, TIANGEN), and placed in a -40°C refrigerator for later use.
[0056] (3) Real-time fluorescent PCR amplification:
[0057] The DNA extracted in step (2) was subjected to qPCR detection. The amplification conditions are: 95°C, 2min; 95°C, 15s, 55°C, 34s, a total o...
Embodiment 3
[0063] Embodiment 3: DNA extraction and detection
[0064] Dalbergia cochinchinensis (experimental group 1), control group: Dalbergia chinensis, black Dalbergia, broad-leaved Dalbergia, East African Dalbergia, Brazilian Dalbergia, Amazon Dalbergia, Belize Dalbergia, Lushi Black Dalbergia, Barry Dalbergia, Saichuan Dalbergia, Dalbergia Dalbergia, Dalbergia tomentosa, Mesoamerican Dalbergia, Dalbergia Osmanthus, and Dalbergia dentata, a total of 15 control genomic DNAs were used as templates, using the plant The source gene tRNALeu and the reaction system of Example 1 and the detection method described in Example 2 are used to detect the extracted DNA.
[0065] The primer and probe sequences of tRNALeu are (standard):
[0066] tRNALeu-F: 5'-CGAAATCGGTAGACGCTACG-3'
[0067] tRNALeu-R: 5'-TTCCATTGAGTCTCTGCACCT-3'
[0068] tRNALeuProbe: 5'-FAM-GCAATCCTGAGCCAAATCC-TAMRA-3'
[0069] Such as figure 1 It shows that the DNA of the samples of the experimental group and the control ...
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