Genetic markers of susceptibility to electromagnetic radiation
A technology of electromagnetic radiation and susceptibility, applied in the fields of genetic markers and drug screening, to achieve the effect of convenience and high accuracy of the kit
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Embodiment 1
[0054] Embodiment 1 prepares in vitro experiment material
[0055] cell
[0056] Selection: 293T cell line (human kidney epithelial cell line), PC12 cell line (rat adrenal pheochromocytoma cell line). 293T cells are widely used for protein overexpression and transient transfection because of their high protein expression level and high cell transfection efficiency; PC12 cells can be used as a mature neuron model after being induced by nerve growth factor, and are widely used in neurophysiological pathology Research, the choice of PC12 cells is conducive to further research in the later stage.
[0057] 293T cell culture medium is DMEM medium, containing 10% fetal bovine serum and 100U / ml penicillin and streptomycin. Cells were passaged by trypsinization. PC12 cells are semi-adherent cells, and their culture flasks and culture plates are coated with poly-lysine solution (concentration: 0.1 mg / ml) before use. The cell culture medium is: DMEM culture medium, containing 5% feta...
Embodiment 2
[0066] Embodiment 2 reporter gene experiment
[0067] The reporter gene experiment was used to detect the difference in promoter activity of different alleles of rs198585630 and the effect of microwave radiation on the promoter activity of different alleles.
[0068] 2.1 Construction of pGL3-basic-rs198585630-T and pGL3-basic-rs198585630-C recombinant plasmids
[0069] Rat HT 1A R gene upstream -967bp to the start codon ATG as its promoter region, synthesized 967bp of promoter target fragments including rs198585630-T and rs198585630-C respectively, and introduced restriction endonuclease sites upstream and downstream: 5' -GGTACC-3' and 5'-CTCGAG-3' (the endonucleases are KpnI and XhoI respectively), a total of 979bp, HT introduced into the endonuclease site 1A The promoter sequence of R is as figure 1 As shown, the T / C allele at position 753 at the 5' end of the promoter sequence, the KpnI restriction site upstream of the promoter, and the XhoI restriction site downstream o...
Embodiment 3
[0101] Example 3 Electrophoretic mobility shift assay (EMSA)
[0102] For the promoter fragment containing rs198585630 site, Gene-regulation and MatInspector online database and program were used to predict. The most likely transcriptional regulator binding to this SNP site is Nkx-2.5 / Csx, and the transcriptional factor binding site (Transcription factor binding site, TFBS) is gcctcTGAGtgct[t / c]aggac (SNP rs198585630 in square brackets) . Biotin-labeled and non-biotinylated nucleotide duplexes containing rs198585630 T allele and C allele were synthesized, respectively. The TFBS sequence is shown in Table 3 (the circled bases are SNP sites):
[0103] table 3
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[0105]
[0106] The PC12 cells were divided into radiation group and sham radiation group, and the coated 25cm culture flasks were used for cell culture, and the cells were placed on the radiation table for microwave radiation or sham radiation, and the cells were collected after 1 hour.
[0107] The nu...
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