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Biological synthesis gene cluster for Azintamide

An azithromycin and gene technology, applied in the field of functional research, analysis, and cloning of biosynthetic gene clusters, can solve the problem of high production cost

Inactive Publication Date: 2010-12-22
SHANGHAI INST OF ORGANIC CHEM CHINESE ACAD OF SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Structural analogs obtained by chemical synthesis, even with improved properties in terms of activity and structural stability, may be too costly to actually produce due to the complexity of the synthesis

Method used

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  • Biological synthesis gene cluster for Azintamide
  • Biological synthesis gene cluster for Azintamide
  • Biological synthesis gene cluster for Azintamide

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0101] Extraction of total DNA of azithromycin-producing bacteria Streptomyces sahachiroi NRRL2485:

[0102] 100 μL of 1 x 10 8 S.lavendulae 314 spore suspension was inoculated into 3mL TSB liquid medium, cultivated at 30°C, 230rpm for about 24hrs and reached the late logarithmic growth phase, then inoculated 2mL into 50mL TSB (containing 10mM magnesium chloride, 0.1% glycine), 30°C, After culturing at 250rpm for about 23hrs, it reached the early stage of the stable growth period, and it was milky yellow and turbid. The bacterial solution was centrifuged at 4°C and 3500rpm for 15min to collect mycelium, washed with lysate, and 0.5mL of pale milky yellow mycelia was collected. Add 10 mL of lysate (containing 5 mg / mL of lysozyme) to 1 mL of mycelium, a total of four tubes, vortex until uniform, and bathe in 37 ° C for 15 min. Add 0.1mL proteinase K (10mg / mL, freshly prepared with lysate), 1mL 10% SDS, mix well and quickly put in 70°C water bath for 15mim, it becomes clear. Co...

Embodiment 2

[0104] Establishment of azithromycin-producing strain Streptomyces sahachiroi NRRL2485 genetic transfer system:

[0105] Culture E.coli S17-1 containing appropriate plasmids to OD 600 0.3-0.4, the bacterial cells in 20mL LB culture medium were collected by centrifugation, washed twice with an equal volume of LB, resuspended in 2mL LB, and used as E. coli donor cells. Take 500 μL of 20% glycerol spore suspension of Streptomyces sahachiroi NRRL2485 frozen at -80°C, wash twice with an equal volume of TES buffer (50 mM TES Na, pH 8.0), resuspend in an equal volume of TES buffer, Heat shock at 50°C for 10 min to germinate the spores. Add an equal volume of TSB medium and incubate at 37°C for 2-5hr. Centrifuge and resuspend in 0.5-1 mL LB as Streptomyces recipient cells. Mix 100 μL of different concentrations of recipient cells with an equal volume of donor cells and directly spread it on a medium containing 10 mM MgCl 2 After incubating at 30°C for 20 hours, gently wash the su...

Embodiment 3

[0108] Construction of azithromycin-producing bacteria Streptomyces sahachiroi NRRL2485 genome library:

[0109] First, through a series of dilution experiments to determine the amount of Sau 3AI, on this basis, a large number of enzyme-digested DNA fragments slightly larger than 40kb, dephosphorylated. pOJ446 was first cut and dephosphorylated from the middle of the two cos sequences with Hpa I, and then cut with BamH I from the multiple cloning site to obtain two arms, which were ligated with the prepared 40kb DNA fragment overnight. Thaw the Promega Packagene extract taken out at -80°C on ice, add 10ul of the ligation product immediately, flick and mix well, and place it at room temperature (about 22°C) for 3hr. Add 445ul Phagebuffer, invert to mix; add 25ul chloroform to terminate the reaction, centrifuge to make the chloroform sink to the bottom, and store at 4°C. The strain E.coli LE392 frozen at -80°C was spread on LB medium for recovery. Take a single colony and inoc...

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Abstract

The present invention provides cloning sequencing, analyzing, function research of a biosynthesis gene cluster of an antibiotic-Azinomycin B having antitumor activity produced by streptomyces, and its application. The whole gene cluster includes 34 genes: one repeatedly using I type polyketide synthase gene; two naphthalene ring modification enzyme genes; 8 non-ribosomal polypeptide skeleton synthesis and modification enzyme genes; 11 non-natural amino acid structure unit synthase genes; 1 resistance gene; 3 post modification enzyme genes and 8 genes which functions are not determined. The genetic operation of the biosynthesis gene breaks the synthesis of Azinomycin B; the precursor compound is produced by the heterologous expression of synthesis gene and modification gene of naphthalene ring. The gene of the invention and the protein can be used for searching and finding compound or gene, protein applied in medical, industry or agriculture.

Description

Technical field: [0001] The invention belongs to the field of microbial gene resources and genetic engineering, and in particular relates to the cloning, analysis, function research and application of the biosynthetic gene cluster of the antitumor antibiotic azinomycin (Azinomycin B). technical background: [0002] Azinomycin (Azinomycins) is a natural antibiotic that can induce cross-linking between DNA strands. It is produced by Streptomyces sahachiroi NRRL2485 and has a very unique structure. It contains two highly active reaction centers: the dehydrated amino acid residue of 1-azabicyclo[3.1.0]hexane and the epoxy three-membered ring. The nitrogen ring structure is only found in the natural compound Ficellomycin [J. Antibiot. (1989) 42, 357-360]. As a class of small molecular compounds, azithromycin can bind to the major groove of DNA and selectively act on the sequence 5'-d(PuNpy)-3'[J.Am.Chem.Soc.(2002) 124,13008 -13017], through the electrophilic attack of the C-10 ...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/31C12N15/52C12P7/40
Inventor 刘文赵群飞
Owner SHANGHAI INST OF ORGANIC CHEM CHINESE ACAD OF SCI
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