Epitope peptide H362 of HN protein in peste des petits ruminants virus (PPRV), and determination, preparation method and application thereof
A technology of PPR and protein antigens, applied in the fields of bioinformatics and immunology, can solve problems such as unfavorable PPR global eradication plan, vaccine thermal stability and virulence reversion
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[0056] A kind of Peste des petits ruminants virus HN protein epitope peptide of the present invention, the aminoacid sequence of described epitope peptide is H362: 362 EANWVVPSTDVRDL 375 .
[0057] The method for determining and preparing the antigenic epitope of the present invention comprises the following steps:
[0058] Calculation simulation:
[0059] Step 1: Use molecular simulation software to construct the 3D structure of the virtual HN protein head: Use Discovery Studio V4.5 to perform homology modeling on the two target proteins——PPRV HN of wild strain and PPRV HN protein of vaccine strain; among them, PPRVHw, GenBank The accession number is FJ905304; PPRV Hv, GenBank accession number: X74443;
[0060] Step 2, search for templates: search the PDB database (www.pdb.org), find the structure of homologous proteins resolved through experiments, and select the protein structure with a sequence identity of more than 30% and a relatively long sequence as the template str...
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