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Production of polyunsaturated fatty acids in oleaginous yeasts

a technology of polyunsaturated fatty acids and oleaginous yeast, which is applied in the field of biotechnology, can solve the problems of inacceptable products as food supplements, unpleasant taste and odor, and high heterogeneous oil composition of natural sources such as fish and plants

Active Publication Date: 2007-07-03
DUPONT US HLDG LLC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

"The present invention provides methods for producing ω-3 and ω-6 fatty acids in an oleaginous yeast host. This is achieved by providing an oleaginous yeast with a functional ω-3 / ω-6 fatty acid biosynthetic pathway and growing it in the presence of a fermentable carbon source. The method can also be used to produce specific ω-6 fatty acids such as linoleic acid, γ-linolenic acid, dihomo-γ-linoleic acid, and arachidonic acid, as well as specific ω-3 fatty acids such as α-linoleic acid, stearidonic acid, eicosatetraenoic acid, eicosapentaenoic acid, docosapentaenoic acid, and docosahexaenoic acid."

Problems solved by technology

Despite a variety of commercial sources of PUFAs from natural sources, there are several disadvantages associated with these methods of production.
First, natural sources such as fish and plants tend to have highly heterogeneous oil compositions.
Fish oils commonly have unpleasant tastes and odors, which may be impossible to separate economically from the desired product and can render such products unacceptable as food supplements.
Unpleasant tastes and odors can make medical regimens based on ingestion of high dosages undesirable, and may inhibit compliance by the patient.
Furthermore, fish may accumulate environmental pollutants and ingestion of fish oil capsules as a dietary supplement may result in ingestion of undesired contaminants.
Natural sources are also subject to uncontrollable fluctuations in availability (e.g., due to weather, disease, or over-fishing in the case of fish stocks); and, crops that produce PUFAs often are not competitive economically with hybrid crops developed for food production.
Large-scale fermentation of some organisms that naturally produce PUFAs (e.g., Porphyridium, Mortierella) can also be expensive and / or difficult to cultivate on a commercial scale.
However, these efforts have proved largely unsuccessful in improving yield of oil or the ability to control the characteristics of the oil composition produced.
Although advances in the art of genetic engineering have been made, such techniques have not been developed for oleaginous yeasts.

Method used

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  • Production of polyunsaturated fatty acids in oleaginous yeasts
  • Production of polyunsaturated fatty acids in oleaginous yeasts
  • Production of polyunsaturated fatty acids in oleaginous yeasts

Examples

Experimental program
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Effect test

example 1

Construction of Plasmids Suitable for Heterologous Gene Expression in Yarrowia lipolytica

[0239]The plasmid pY5, a derivative of pINA532 (a gift from Dr. Claude Gaillardin, Insitut National Agronomics, Centre de biotechnologie Agro-Industrielle, laboratoire de Genetique Moleculaire et Cellularie INRA-CNRS, F-78850 Thiverval-Grignon, France), was constructed for expression of heterologous genes in Yarrowia lipolytica, as diagrammed in FIG. 3.

[0240]First, the partially-digested 3598 bp EcoRI fragment containing the ARS18 sequence and LEU2 gene of pINA532 was subcloned into the EcoRI site of pBluescript (Strategene, San Diego, Calif.) to generate pY2. The TEF promoter (Muller S., et al. Yeast, 14: 1267-1283 (1998)) was amplified from Yarrowia lipolytica genomic DNA by PCR using TEF5′ (SEQ ID NO:38) and TEF3′ (SEQ ID NO:39) as primers. PCR amplification was carried out in a 50 μl total volume containing: 100 ng Yarrowia genomic DNA, PCR buffer containing 10 mM KCl, 10 mM (NH4)2SO4, 20 m...

example 2

Selection of Δ6 Desaturase, Δ5 Desaturase. Δ17 Desaturase and High Affinity PUFA Elongase Genes for Expression in Yarrowia lipolytica

[0250]Prior to the introduction of specific genes encoding an ω-3 and / or ω-6 biosynthetic pathway into oleaginous yeast, it was necessary to confirm the functionality of heterologous Δ6 desaturase, elongase, Δ5 desaturase and Δ17 desaturase genes expressed in Yarrowia. This was accomplished by measuring the conversion efficiency encoded by each wildtype gene in the alternate host. Specifically, four Δ5 desaturases, a Mortierella alpina Δ6 desaturase, a Saprolegnia diclina Δ17 desaturase and a M. alpina high affinity PUFA elongase were separately expressed and screened for activity in substrate-feeding trials. Based on these results, a M. alpina Δ5 desaturase gene was selected for use in conjunction with the Δ6 and Δ17 desaturase and high affinity PUFA elongase genes.

Construction of Expression Plasmids

[0251]In general, wildtype desaturase or elongase g...

example 3

Synthesis and Expression of a Codon-Optimized Δ17 Desaturase Gene in Yarrowia lipolytica

[0282]Based on the results of Example 2, genes encoding Δ6 desaturase, elongase and Δ5 desaturase activies were available that each enabled ˜30% substrate conversion in Yarrowia lipolytica. The Δ17 desaturase from S. diclina, however, had a maximum percent substrate conversion of only 23%. Thus, a codon-optimized Δ17 desaturase gene was designed, based on the Saprolegnia diclina DNA sequence (SEQ ID NO:5), according to the Yarrowia codon usage pattern, the consensus sequence around the ATG translation initiation codon and the general rules of RNA stability (Guhaniyogi, G. and J. Brewer, Gene 265(1-2):11-23 (2001)).

[0283]In addition to modification to the translation initiation site, 127 bp of the 1077 bp coding region (comprising 117 codons) were codon-optimized. A comparison between this codon-optimized DNA sequence (SEQ ID NO:9) and the S. diclina Δ17 desaturase gene DNA sequence (SEQ ID NO:5)...

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Abstract

The present invention relates to methods for the production of ω-3 and / or ω-6 fatty acids in oleaginous yeast. Thus, desaturases and elongases able to catalyze the conversion of linoleic acid (LA) to γ-linolenic acid (GLA); α-linoleic acid (ALA) to stearidonic acid (STA); GLA to dihomo-γ-linoleic acid (DGLA); STA to eicosatetraenoic acid (ETA); DGLA to arachidonic acid (ARA); ETA to eicosapentaenoic acid (EPA); DGLA to ETA; EPA to docosapentaenoic acid (DPA); and ARA to EPA have been introduced into the genome of Yarrowia for synthesis of ARA and EPA.

Description

[0001]This application claims the benefit of U.S. Provisional Application No. 60 / 468677, filed May 7, 2003.FIELD OF THE INVENTION[0002]This invention is in the field of biotechnology. More specifically, this invention pertains to the production of long chain polyunsaturated fatty acids (PUFAs) in oleaginous yeasts.BACKGROUND OF THE INVENTION[0003]It has long been recognized that certain polyunsaturated fatty acids, or PUFAs, are important biological components of healthy cells. For example, such PUFAs are recognized as:[0004]“Essential” fatty acids that can not be synthesized de novo in mammals and instead must be obtained either in the diet or derived by further desaturation and elongation of linoleic acid (LA) or α-linolenic acid (ALA);[0005]Constituents of plasma membranes of cells, where they may be found in such forms as phospholipids or triglycerides;[0006]Necessary for proper development, particularly in the developing infant brain, and for tissue formation and repair; and,[0...

Claims

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Application Information

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Patent Type & Authority Patents(United States)
IPC IPC(8): C12Q1/68C07H21/04C12N1/19C12N15/63C12P7/6432C12NC12N1/18C12N9/04C12N15/74C12P7/6427C12P7/6472
CPCC12P7/6427C12P7/6472C12N15/815C12P7/6432C12N1/16C12P7/64
Inventor PICATAGGIO, STEPHEN K.YADAV, NARENDRA S.ZHU, QUINN QUN
Owner DUPONT US HLDG LLC
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