Nucleic acid and corresponding protein named 158P1D7 useful in the treatment and detection of bladder and other cancers
a nucleic acid and corresponding protein technology, applied in the field of new nucleic acid sequence and its encoded protein, can solve the problems of increasing problem, poor sensitivity of methods, and increasing incidence and mortality of bladder cancer, and achieve the effect of inhibiting transcription, translation, processing or function
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example 1
SSH-Generated Isolation of a cDNA Fragment of the 158P1D7 Gene
[0318] To isolate genes that are over-expressed in bladder cancer we used the Suppression Subtractive Hybridization (SSH) procedure using cDNA derived from bladder cancer tissues, including invasive transitional cell carcinoma. The 158P1D7 SSH cDNA sequence was derived from a bladder cancer pool minus normal bladder cDNA subtraction. Included in the driver were also cDNAs derived from 9 other normal tissues. The 158P1D7 cDNA was identified as highly expressed in the bladder cancer tissue pool, with lower expression seen in a restricted set of normal tissues.
[0319] The SSH DNA sequence of 231 bp (FIG. 1) has high homology (230 / 231 identity) to a hypothetical protein FLJ22774 (GenBank accession XM—033183) derived from a chromosome 13 genomic clone. A 158P1D7 cDNA clone (TurboScript3PX) of 2,555 bp was isolated from bladder cancer cDNA, revealing an ORF of 841 amino acids (FIG. 2 and FIG. 3).
[0320] The 158P1D7 protein has...
example 2
Full Length Cloning of 158P1D7
[0343] The 158P1D7 SSH cDNA sequence was derived from a bladder cancer pool minus normal bladder cDNA subtraction. The SSH cDNA sequence (FIG. 1) was designated 158P1D7. The full-length cDNA clone 158P1D7-clone TurboScript3PX (FIG. 2) was cloned from bladder cancer pool cDNA.
[0344] 158P1D7 clone cDNA was deposited under the terms of the Budapest Treaty on 22 August 2001, with the American Type Culture Collection (ATCC; 10801 University Blvd., Manassas, Va. 20110-2209 USA) as plasmid p58P1D7-Turbo / 3PX, and has been assigned Accession No. ______ (docket #______).
example 3
Chromosomal Mapping of 158P1D7
[0345] Chromosomal localization can implicate genes in disease pathogenesis. Several chromosome mapping approaches are available including fluorescent in situ hybridization (FISH), human / hamster radiation hybrid (RH) panels (Walter, et al., Nature Genetics (1994) 7:22), human-rodent somatic cell hybrid panels such as is available from the Coriell Institute (Camden, N.J.), and genomic viewers utilizing BLAST homologies to sequenced and mapped genomic clones (NCBI, Bethesda, Md.).
[0346] 158P1D7 maps to chromosme 13, using 158P1D7 sequence and the NCBI BLAST tool. This is a region of frequent amplification in bladder cancer (Prat, et al., Urology (2001) 57(5):986-92; Muscheck, et al., Carcinogenesis (2000) 21(9):1721-26) and is associated with rapid tumor cell proliferation in advanced bladder cancer (Tomovska, et al., Int. J. Oncol. (2001) 18(6): 1239-44).
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