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Three-dimensional DNA walker and application thereof in tumor exosome detection

A tumor exosome and walker technology, applied in the field of biochemistry, can solve the problems of complex orbital fabrication, low synthesis yield, and high synthesis cost, and achieve the effect of simplifying the experimental operation process, low cost, and strong anti-false positive effect.

Active Publication Date: 2022-01-14
HUNAN UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] The technical problem to be solved by the present invention is to overcome the deficiencies of the prior art, to provide a track self-service three-dimensional DNA walker with simple preparation and high walking efficiency and its application in the detection of tumor exosomes, so as to solve the problem of traditional DNA walkers. Existing problems such as complex track making, low synthesis yield, high synthesis cost, and time-consuming

Method used

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  • Three-dimensional DNA walker and application thereof in tumor exosome detection
  • Three-dimensional DNA walker and application thereof in tumor exosome detection
  • Three-dimensional DNA walker and application thereof in tumor exosome detection

Examples

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Effect test

Embodiment 1

[0038] A recognition probe for exosomes of SMMC-7721 liver cancer according to the present invention includes split probe a, split probe b, hairpin H1 and hairpin H2.

[0039] The cleavage-type probe a includes a cleavage-type Aptamer sequence Apt-a, a cleavage-type trigger sequence Ta and a linker fragment linker. Among them, Apt-a and Ta are connected to split-type probe a through linker.

[0040] Split-type probe b includes Apt-b and Tb. Apt-b connects with Tb to form split probe b.

[0041] The split-type nucleic acid aptamers Apt-a and Apt-b in this example are formed by splitting a complete Aptamer sequence into two parts, which can be specifically recognized and assembled on the target protein on the surface of exosomes to form the same complete Aptamer has a similar recognition structure, a DNA fragment with specific recognition ability for SMMC-7721 liver cancer exosomes.

[0042] Wherein the nucleotide sequence of Apt-a is shown in SEQ ID NO.1:

[0043] 5'-acggac...

Embodiment 2

[0062] An application of the liver cancer exosome recognition probe of Example 1 in the detection of SMMC-7721 liver cancer exosomes.

[0063] Its application method is:

[0064] Add different concentrations of SMMC-7721 exosomes to Tris-HCl containing cholesterol-modified Cy3-H1 (200nM) and Cy5-H2 (200nM), and incubate at 37°C for 0.5h to ensure that the catalytic hairpin probe passes through cholesterol The interaction with the phospholipid bilayer sufficiently anchors the exosome membrane to prepare a three-dimensional track that catalyzes hairpin assembly. Then add 50nM cleave-type probes (50nM cleave-type probe a and 50nM cleave-type probe b) to the above reaction system, react at 37°C for 2.5h, and use steady-state near-infrared fluorescence after the fluorescence is stable. A spectroscopic system (QM40-NIR) records the fluorescence spectrum, the excitation wavelength is 530nm, the emission wavelength is 550-750nm, and the slit widths for both excitation and emission ar...

Embodiment 3

[0067] Investigate the detection specificity of the recognition probe of liver cancer exosomes in Example 1 to SMMC-7721 liver cancer exosomes:

[0068] Add liver cancer SMMC-7721 exosomes to 100 μL Tris-HCl buffer solution containing Cy3-H1 (200 nM) and Cy5-H2 (200 nM), and incubate at 37 ° C for 0.5 h, until the hairpin probe is fully anchored in the exosomes After the phospholipid bilayer was coated, 50nM split probe was added to the reaction system and reacted at 37°C for 2.5h. After the fluorescence was stable, the fluorescence spectrum was recorded with a steady-state near-infrared fluorescence spectroscopy system (QM40-NIR). In addition, the buffer solution containing control exosomes such as human liver cancer HepG2 exosomes, human cervical cancer HeLa exosomes, and human normal liver cell L02 exosomes were tested, and the operation was as described above. For test results, see image 3 .

[0069] From image 3 It can be seen that the fluorescence resonance energy t...

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Abstract

The invention provides a three-dimensional DNA walker and application thereof in tumor exosome detection. The three-dimensional DNA walker comprises a split probe a, a split probe b, a hairpin H1 and a hairpin H2; the split probe a is formed by connecting a split Aptamer sequence Apt-a and a split trigger sequence Ta, and the split probe b is formed by connecting a split Aptamer sequence Apt-b and a split trigger sequence Tb. According to the invention, the target exosome is used as a three-dimensional orbit carrier, the three-dimensional orbit assembled by the catalytic hairpin can be quickly and conveniently synthesized through the interaction of the cholesterol-phospholipid bilayer, and the experimental operation process is greatly simplified. Beneficial to Aptamer specific recognition performance and low background advantages based on a split trigger chain strategy, the three-dimensional DNA walker can be used for detecting tumor exosomes, and can also realize direct detection of targets in a complex system and even in clinical plasma.

Description

technical field [0001] The invention belongs to a detection method in the field of biochemistry, and in particular relates to a three-dimensional DNA walker and its application in the detection of tumor exosomes. Background technique [0002] As one of the most abundant forms of protein post-translational modification (PMT) in organisms, glycosylation is closely related to the occurrence and development of various diseases such as tumors, so it helps to better understand the signal of exosomes in intercellular communication Conductive properties. Tumor-derived exosomes (Exos) are nanoscale extracellular vesicles that play an important role in physiological and pathological processes by selectively encapsulating bioactive molecules such as proteins, nucleic acids, and lipids, and transferring them to recipient cells . Therefore, monitoring the expression level of glycoproteins on the surface of exosomes is of great significance for the study of biological functions. Howeve...

Claims

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Application Information

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IPC IPC(8): C12Q1/6818C12Q1/6886C12N15/11C12N15/115
CPCC12Q1/6818C12Q1/6886C12Q2525/205C12Q2525/301C12Q2563/107C12Q2565/101Y02A50/30
Inventor 何晓晓王绘珍王柯敏曾家豪
Owner HUNAN UNIV
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