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A linker element and method for constructing sequencing library using same

A technology of adapter elements and construction methods, which is applied in the biological field and can solve the problems of shortening the time required for adapter ligation, low efficiency of fragment ligation, and cost reduction, etc.

Active Publication Date: 2021-01-15
MGI TECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The method for constructing a sequencing library of the present invention abandons the traditional multi-step method of adding adapters at both ends when connecting adapters, and connects adapters with a unique sequence structure and the same novel adapter connection + single-strand replacement. method, while ensuring the directionality of adapter ligation, it solves the problems of fragment interconnection, adapter self-ligation, and low efficiency of fragment ligation, and successfully simplifies the entire adapter ligation process into four new steps, and reduces the purification between steps The reaction greatly shortens the time required for adapter ligation, and significantly reduces the cost; in addition, the sequencing library construction method of the present invention can further introduce nucleic acid probe capture technology, thereby realizing the sequencing of the target genome region, and successfully creating a single-strand library-based Target Region Capture Sequencing Products for Circular Library Sequencing Platforms

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  • A linker element and method for constructing sequencing library using same
  • A linker element and method for constructing sequencing library using same
  • A linker element and method for constructing sequencing library using same

Examples

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Embodiment 1

[0076] Example 1 Sequencing library construction of the present invention

[0077] 1. Interruption of genomic DNA: There are many ways to interrupt genomic DNA. Whether it is physical ultrasonic method or enzyme reaction method, there are very mature solutions on the market. This embodiment adopts the physical ultrasonic fragmentation method.

[0078] Take a 96-well PCR plate, add a polytetrafluoroethylene line, add 1ug of genomic DNA, add TE buffer solution or enzyme-free water to make up 80ul. After sealing the board, ultrasonically break it on the E220 ultrasonic breaker. Interrupt condition settings:

[0079] Fill factor 21% pressure (PIP) 500 Impulse factor 500 interrupt time 20s, 6 times

[0080] 2. Fragment selection: magnetic bead purification or gel recovery can be used. In this example, the magnetic bead purification method was used.

[0081]Take the fragmented DNA, add 64ul Ampure XP magnetic beads, mix well and let stand for 7...

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Abstract

Provided is a linker element and a method of using the linker element to construct a sequencing library, wherein the linker element consists of a linker A and a linker B, the linker A is obtained through the complementary pairing of a long nucleic acid strand and a short nucleic acid strand, the 5' end of the long strand has a phosphoric acid modification, and the 3' end of the short strand has an enclosed modification, with enzyme sites in the short strand; the linker B is a nucleic acid single strand, the 3' end thereof can be in a complementary pairing with the 5' end of the long strand of the linker A; and there are II type restriction endonuclease recognition sites in the long strand of the linker A and the linker B. Using the linker element of the present invention for constructing a sequencing library ensures the linking directionality of the linkers while solving the problems of fragment interlinking, linker self-linking and low linking efficiency, and reducing the purification reaction between steps, shortening the linking time and reducing costs.

Description

technical field [0001] The present invention relates to the field of biotechnology, in particular to an adapter element, a method for constructing a sequencing library using the adapter element, the constructed sequencing library and applications thereof. Background technique [0002] High-throughput sequencing has become one of the foundations of modern molecular biology, biotechnology, medicine and many other fields. In recent years, research on rapid, accurate, and economical methods for determining gene expression levels and nucleotide sequences has continued to innovate; the second-generation high-throughput sequencing technology based on the principle of sequencing while synthesizing has matured. Major sequencing companies have focused on the development of new sequencing products, shortening the sequencing process and reducing costs. The existing sequencing products based on the second generation sequencing technology include whole genome resequencing, whole transcri...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/11C12Q1/6806C40B50/06C40B40/06C40B80/00
CPCC12N15/11C12Q1/68C40B40/06C40B50/06
Inventor 江媛赵霞耿春雨傅书锦贺玲瑜苏小珊吴凡子李雅乔章文蔚蒋慧阿莱克谢耶夫安德烈徳马纳克拉多杰
Owner MGI TECH CO LTD
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