Fluorescence-labeled multiplex amplification kit for simultaneously amplifying human autosome and y-chromosome str loci and its application
An autosomal and Y chromosome technology, applied in the field of molecular genetics, can solve problems such as delayed capture, increase detection time, shorten detection time, etc., and achieve the effect of improving exclusion and determination, strengthening the adaptability of test materials, and shortening detection time.
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Embodiment 1
[0033] Screening of embodiment 1STR loci
[0034]通过对DYS549、DYS522、DYS389I、DYS439、DYS447、DYS389II、DYS392、DYS576、DYS19、DYS388、DYS391、DYS635、DYS460、DYS456、DYS533、DYS520、DYS438、DYS527a / b、DYS449、DYS709、DYS622、DYS481、DYS437、 DYS390、DYS630、DYS448、Y_GATA_H4、DYS458、DYS607、DYS393、DYS552、DYS570、DYS385a / b、DYS593、DYS444、DYS643、Amelogenin、vWA、D10S1248、D2S441、D21S11、D18S51、D5S818、D7S820、D13S317、D16S539、FGA、 D2S1338, D22S1045, D1S1656, D19S433, D6S1043, D12S391, D8S1179, D3S1358, CSF1PO, Penta D, PentaE, TH01 and TPOX, a total of 62 gene polymorphism research, to ensure that the loci are compatible with the mainstream kits in the market (ABI company Identifiler and Yfiler) loci have certain compatibility, that is, on the premise that they can be shared and communicated with existing DNA data, 18 Y chromosome STR loci, 15 autosomal STR loci and Amelogenin loci were screened out . The corresponding information for each locus is shown in Table 4.
[0035] Table 4:
[0036]
[0037]
Embodiment 2
[0038] Example 2 Kit STR locus arrangement
[0039] D3S1358, D13S317, D7S820, D16S539, DYS527a / b, DYS448 are the first group, the fluorescent dye label is 6-FAM; DYS456, TPOX, TH01, D2S1338, CSF1PO, DYS385a / b, DYS458 are the second group, the fluorescent dye labeling The substance is HEX; DYS391, D19S433, vWA, D21S11, D18S51, and DYS390 are the third group, and the fluorescent dye marker is TAMRA; Amelogenin, D8S1179, D5S818, DYS19, FGA, and DYS438 are the fourth group, and the fluorescent dye marker is ROX. DYS393, DYS389Ⅰ, DYS439, DYS389Ⅱ, DYS392, Y_GATA_H4, and DYS635 are the fifth group, and the fluorescent dye marker is VIG. See the grouping diagram figure 1 shown.
Embodiment 3
[0040] Embodiment 3 kit-specific primer design and different primer concentration debugging
[0041] With the increase of the number of primers in the multiplex amplification system, the mutual interference between primers at different loci becomes more and more serious, and the kinetics of the reaction system become more and more complex, so it is necessary to design a large number of primer sequences for complex testing And explore the specific concentration ratio between the primers in the multiplex amplification system, and finally ensure that more STR loci are compounded without reducing the specificity and sensitivity of the kit.
[0042] (1) Specific primer design
[0043] Before designing primers, it is necessary to analyze the properties of the target sequence to be tested, and select highly conserved regions with uniform base distribution for primer design.
[0044] a. Primer Tm value: Due to different algorithms, primers designed by different software have differen...
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