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Fluorescence-labeled multiplex amplification kit for simultaneously amplifying human autosome and y-chromosome str loci and its application

An autosomal and Y chromosome technology, applied in the field of molecular genetics, can solve problems such as delayed capture, increase detection time, shorten detection time, etc., and achieve the effect of improving exclusion and determination, strengthening the adaptability of test materials, and shortening detection time.

Active Publication Date: 2018-04-20
AGCU SCIENTECH +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the Y-chromosome STR kit (Yfiler) and the autosomal STR kit (Identifiler) produced by ABI Company, which are the most widely used in China, are only used twice due to the influence of the status of the sample, the number of amplification sites, and the amplification system. The PCR process takes 5-6 hours, so the two inspection procedures often delay the best chance of catching the criminal suspect because of the increased detection time, and at the same time, the small amount of physical evidence left by the criminal suspect at the scene leads to detection Fail and eventually lose the scout lead
All in all, with the increase of criminal cases, the existing detection kits can no longer meet the requirements of public security for the rapid detection and on-site detection of forensic DNA in actual combat. How to realize the detection of autosomal STR loci and Y chromosome STR loci together , to shorten the detection time while improving the efficiency of excluding and identifying criminal suspects has become a problem to be solved

Method used

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  • Fluorescence-labeled multiplex amplification kit for simultaneously amplifying human autosome and y-chromosome str loci and its application
  • Fluorescence-labeled multiplex amplification kit for simultaneously amplifying human autosome and y-chromosome str loci and its application
  • Fluorescence-labeled multiplex amplification kit for simultaneously amplifying human autosome and y-chromosome str loci and its application

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0033] Screening of embodiment 1STR loci

[0034]通过对DYS549、DYS522、DYS389I、DYS439、DYS447、DYS389II、DYS392、DYS576、DYS19、DYS388、DYS391、DYS635、DYS460、DYS456、DYS533、DYS520、DYS438、DYS527a / b、DYS449、DYS709、DYS622、DYS481、DYS437、 DYS390、DYS630、DYS448、Y_GATA_H4、DYS458、DYS607、DYS393、DYS552、DYS570、DYS385a / b、DYS593、DYS444、DYS643、Amelogenin、vWA、D10S1248、D2S441、D21S11、D18S51、D5S818、D7S820、D13S317、D16S539、FGA、 D2S1338, D22S1045, D1S1656, D19S433, D6S1043, D12S391, D8S1179, D3S1358, CSF1PO, Penta D, PentaE, TH01 and TPOX, a total of 62 gene polymorphism research, to ensure that the loci are compatible with the mainstream kits in the market (ABI company Identifiler and Yfiler) loci have certain compatibility, that is, on the premise that they can be shared and communicated with existing DNA data, 18 Y chromosome STR loci, 15 autosomal STR loci and Amelogenin loci were screened out . The corresponding information for each locus is shown in Table 4.

[0035] Table 4:

[0036]

[0037]

Embodiment 2

[0038] Example 2 Kit STR locus arrangement

[0039] D3S1358, D13S317, D7S820, D16S539, DYS527a / b, DYS448 are the first group, the fluorescent dye label is 6-FAM; DYS456, TPOX, TH01, D2S1338, CSF1PO, DYS385a / b, DYS458 are the second group, the fluorescent dye labeling The substance is HEX; DYS391, D19S433, vWA, D21S11, D18S51, and DYS390 are the third group, and the fluorescent dye marker is TAMRA; Amelogenin, D8S1179, D5S818, DYS19, FGA, and DYS438 are the fourth group, and the fluorescent dye marker is ROX. DYS393, DYS389Ⅰ, DYS439, DYS389Ⅱ, DYS392, Y_GATA_H4, and DYS635 are the fifth group, and the fluorescent dye marker is VIG. See the grouping diagram figure 1 shown.

Embodiment 3

[0040] Embodiment 3 kit-specific primer design and different primer concentration debugging

[0041] With the increase of the number of primers in the multiplex amplification system, the mutual interference between primers at different loci becomes more and more serious, and the kinetics of the reaction system become more and more complex, so it is necessary to design a large number of primer sequences for complex testing And explore the specific concentration ratio between the primers in the multiplex amplification system, and finally ensure that more STR loci are compounded without reducing the specificity and sensitivity of the kit.

[0042] (1) Specific primer design

[0043] Before designing primers, it is necessary to analyze the properties of the target sequence to be tested, and select highly conserved regions with uniform base distribution for primer design.

[0044] a. Primer Tm value: Due to different algorithms, primers designed by different software have differen...

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Abstract

The invention discloses a fluorescence labeling combination amplification reagent kit capable of synchronously amplifying autosome gene loca and Y chromosome STR gene loca of people and application of the fluorescence labeling combination amplification reagent kit. The reagent kit can simultaneously amplify 34 gene loca to the maximum in a single tube reaction in a combination mode, wherein 34 gene loca include 15 autosome gene loca, 18 Y chromosome STR gene loca and Amelogenin. The six-color fluorescence technology is adopted, a unique gene locus arrangement mode is matched, the 34 gene loca are divided into five groups, all the groups of STR gene loca are labeled by different fluorescence labels, and in addition, the reagent kit has very high detection material adaptability. By means of the reagent kit, the autosome gene loca and the Y chromosome STR gene loca are detected simultaneously, the amplification template amount can be reduced, the detection time can be shortened, and meanwhile the efficiency of excluding and determining criminal suspects can be improved.

Description

technical field [0001] The invention belongs to the field of molecular genetics, and relates to a multiple amplification testing system for human autosomes and Y chromosome STR loci, in particular to a fluorescent labeling multiple amplification kit for simultaneously amplifying human autosomes and Y chromosome STR loci, It can be applied to forensic individual identification, suspect family investigation and paternity identification, etc. Background technique [0002] Short tandem repeats (Short Tandem Repeat, STR) are a type of DNA sequence with length polymorphism existing in the human genome, and its core sequence is generally composed of 2 to 6 bases, because the core sequence varies among different Length polymorphisms are present with varying numbers of tandem repeats. On average, there is one STR locus every 6-10kb in the human genome DNA. These highly polymorphic repeat sequences widely distributed in the human genome become effective genetic markers for individual...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/6888
CPCC12Q1/6888C12Q2600/158C12Q2600/16
Inventor 郑卫国周怀谷梅兴林葛海鹏郭育林
Owner AGCU SCIENTECH
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