Liquid phase chip for detecting breast cancer prognosis-related gene mRNA expression level
A liquid phase chip and expression level technology, applied in the field of molecular biology, can solve the problems of long process, cumbersome operation, accuracy easily affected by pathological conditions, etc.
- Summary
- Abstract
- Description
- Claims
- Application Information
AI Technical Summary
Problems solved by technology
Method used
Image
Examples
Embodiment 1
[0085] Example 1: A liquid-phase chip kit for detection of mRNA expression levels of breast cancer prognosis-related genes, mainly including:
[0086] 1. Microspheres coupled with supporting probes (SP)
[0087] The support probe consists of three parts, the 5' end is the amino terminal bound to the microsphere, the 3' end is the specific sequence P1 bound to the support extension probe, the length is 16nt, and the middle is 8 oligonucleotides T Each target gene uses a microsphere and a support probe, and each microsphere has a different fluorescent code. The supporting probes for each target gene are shown in Table 1:
[0088] Table 1 Different target genes and the number of selected microspheres, supporting probes (SP)
[0089] Gene
Microsphere number
SP sequence (5'→3')NH 2 +poly(dT)+P1
P1: SEQID
ESR1
29
NH 2 -TTTTTTTT-GATTTGTAGTAAGATT
1
PGR
45
NH 2 -TTTTTTTT-TTGAGTAATTGAATTG
2
RPLPO
35
N...
Embodiment 2
[0124] Example 2 Detection of samples by using the liquid chip for detection of mRNA expression levels of breast cancer prognosis-related genes described in Example 1
[0125] The formula of described various solutions is as follows:
[0126]
[0127]
[0128] 1. Lysis samples to release total RNA
[0129] 1. Put the sample to be tested into a 1.5ml centrifuge tube, add 300ul homogenization buffer and 3ul proteinase K (50ug / ul), mix well, and digest at 65°C for 2h.
[0130] 2. After digesting the sample for 2 hours, centrifuge at 13,000rpm for 5 minutes at room temperature, and transfer the clear solution in the middle to a new 1.5ml centrifuge tube for later use. (If the solution is still not clear, repeat this step 1 or 2 times.)
[0131] 2. The target mRNA is immobilized on the microspheres by specific binding with the probe
[0132] 1. Take out the probe working solution and thaw at room temperature, then denature at 95°C for 5 minutes, and immediately put it on i...
Embodiment 3
[0164] Example 3: Detection of mRNA expression levels of genes related to breast cancer prognosis Liquid chip detection of ESR1 and PGR (without internal reference genes)
[0165] 1. Design of liquid phase chip preparation (liquid phase chip for detection of mRNA expression levels of ESR1 and PGR)
[0166] Taking the liquid phase chip for detecting the mRNA expression level of ESR1 and PGR as an example, the samples were detected, and the mRNA expression level of ESR1 and PGR in sample 11 was used as a reference standard, defined as 1, and the mRNA expression of ESR1 and PGR in other samples The levels were divided by the mRNA expression levels of ESR1 and PGR in sample 11, and the resulting relative values were compared. Concrete design is as shown in embodiment 1. The synthesis of support probes, support extension probes, amplification extension probes, anti-tag sequence coated microspheres, amplification primers, detection methods, etc. are as described in Example 1 and ...
PUM
Abstract
Description
Claims
Application Information
- R&D Engineer
- R&D Manager
- IP Professional
- Industry Leading Data Capabilities
- Powerful AI technology
- Patent DNA Extraction
Browse by: Latest US Patents, China's latest patents, Technical Efficacy Thesaurus, Application Domain, Technology Topic, Popular Technical Reports.
© 2024 PatSnap. All rights reserved.Legal|Privacy policy|Modern Slavery Act Transparency Statement|Sitemap|About US| Contact US: help@patsnap.com