Optical super-multiplexing by polyynes

a technology of optical super-multiplexing and polyynes, applied in the direction of nanosensors, microorganism testing/measurement, biochemistry apparatus and processes, etc., can solve the problem of more than 2000 optical barcodes, requiring complicated optical setup and spectral un-mixing, and limited number of resolvable features for fluorescence detection. to achieve the effect of multiplexing live cells

Pending Publication Date: 2020-06-25
THE TRUSTEES OF COLUMBIA UNIV IN THE CITY OF NEW YORK
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Benefits of technology

[0023]In another exemplary embodiment, the polyynes are used for optical data storage and identification using super-multiplexed spectral barcoding. A plurality, such as more than 50,000, distinct barcodes can be readily generated in micron-sized beads for high-throughput diagnostic assays, and higher numbers of optical IDs can be obtained for single cell tagging and mapping. Thus, this application greatly extends the current limit of optical multiplexing and facilitates multiplexed live-cell imaging, high-throughput medical diagnostics, and cell atlas in vivo.

Problems solved by technology

However, due to the broad linewidth and significant overlap in fluorescence spectra, the number of resolvable features for fluorescence detection is limited.
Thus, multiplexed fluorescence microscopy can achieve fewer than 10-color simultaneous imaging, requiring the use of complicated optical setup and spectral un-mixing, and less than 2000 optical barcodes can be created even with combinatory spectral encoding, due to the unavoidable crosstalk and self-quenching issues.
However, because of the broad linewidth and significant spectral overlap, the number of resolvable features in current luminescent materials is limited.
Less than 7 colors can be practically imaged in live cells by fluorescence multiplexing microscopy requiring multiple lasers, filters and detectors as well as complicated spectral unmixing and color compensation.
And fewer than 2000 spectral barcodes can be reached with combinatory encoding due to the unavoidable crosstalk in organic dyes, FRET energy transfer between different quantum dots limited number of suitable features and complicated decoding procedures with rare-earth nanocrystals and metal nanoparticles.
Difficulty in accessing stable polyynes has made them largely unexplored.

Method used

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example 1

[0243]All reagents and solvents were purchased from Sigma-Aldrich and Fisher Scientific and were used without further purification, unless otherwise stated. Flash chromatography was performed on silica gel (Silicycle, 40-63 μm). TLC was performed on 5 mm E. Merck silica plates (60F-254) and visualized by UV light or potassium permanganate (KMnO4) or ceric ammonium molybdate (CAM) stain.

[0244]Nuclear magnetic resonance (NMR) spectra were recorded on a Bruker 500 (500 MHz) Bruker 400 (400 MHz) Fourier Transform (FT) NMR spectrometers at Columbia University, Chemistry Department. NMR spectra were calibrated using residual undeuterated solvent (1H: δ 7.26 for CDCl3, δ 3.31 for MeOH-d4, δ 2.50 for DMSO-d6; 13C: δ 77.16 for CDCl3, δ 49.0 for MeOH-d4, δ 39.50 for DMSO-d6). The following abbreviations were used to explain multiplicities: s=singlet, d=doublet, t=triplet, q=quartet, m=multiplet, br=broad. High resolution mass spectra (HRMS) were recorded on a XEVO G2-XS Waters mass spectromet...

example 2

d Raman Scattering (SRS) Microscopy

[0354]An integrated laser system (picoEMERALD, Applied Physics & Electronics, Inc.) is used to produce two synchronized laser beams at 80 MHz repetition rate. A fundamental Stokes beam (1064 nm, 6 ps pulse width) is intensity modulated at 8 MHz by an electro-optic-modulator with >90% modulation depth, and a tunable pump beam (720-990 nm, 5-6 ps pulse width) is produced by a build-in optical parametric oscillator. The pump and Stokes beams are spatially and temporally overlapped using two dichroic mirrors and a delay stage inside the laser system, and coupled into an inverted laser-scanning multiphoton microscope (FV1200MPE, Olympus) with optimized near-IR throughput.

[0355]The lasers are focused on the sample through a 25× water objective (XLPlan N, 1.05 N.A. MP, Olympus) or a 60× water objective (UPlanAPO / IR, 1.2 N.A., Olympus) with high near-IR transmission. The beam sizes of pump and Stokes laser are adjusted to match the back-aperture of the obj...

example 3

Antibody Conjugation with 4-yne NHS Ester

[0360]Goat-anti-Rabbit secondary antibodies (2 mg / mL, Millipore, AP132) are adjusted to pH-8.3 with sodium bicarbonate solution. 50 μL 4 mg / mL 4-yne NHS ester in DMSO solution is added dropwise to 250 μL protein solution while stirring. Reaction is kept under gentle stirring at RT for 1 h. The labeled antibodies are purified using gel permeation chromatography with Sephadex® G-25 (Sigma, G25150). Sephadex® G-25 gel is first swelled in PBS buffer at 90° C. for 1 h and settled down at room temperature. The gel is then exchanged with fresh PBS buffer and stored at 4° C. For gel chromatography, the column (diameter ˜1 cm and length >12 cm) is loaded with swelled gels and equilibrated with PBS buffer. The antibody solution is applied and eluted with PBS. The first band with light color for 4-yne conjugated antibodies is collected. The solution is centrifuged briefly and the supernatant is concentrated using Amicon® Ultra Centrifugal Filters (Milli...

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Abstract

A method for optical super-multiplexing using polyynes to provide enhanced images from stimulated Raman microscopy is disclosed. In some exemplary embodiments, the polyynes are organelle-targeted or spectral barcoded. Imaging can be enhanced by using the polyynes to image whole live cells or specific organelles within live cells. The polyynes can also be used in optical data storage (i.e., encoding) and identification (i.e., decoding) applications.

Description

CROSS-REFERENCE TO RELATED APPLICATION(S)[0001]This application claims the benefit and priority from U.S. Provisional Application No. 62 / 540,953 filed on Aug. 3, 2017 and U.S. Provisional Application No. 62 / 616,624 filed on Jan. 12, 2018, the entire disclosures of which are incorporated herein by reference.STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH[0002]This invention was made with government support under Grant No. R01EB020892 awarded by the National Institute of Health. The government has certain rights in the invention.FIELD OF THE DISCLOSURE[0003]The present disclosure generally relates to optical super-multiplexing applications in live cell imaging using polyynes, as well as libraries of polyynes useful in optical super-multiplexing applications.BACKGROUND INFORMATION[0004]The current big data era has created increasing demands for rapid accumulation of massive information, where high-throughput multiplexed detection of large number of targets is highly desirable. Optical...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12Q1/6816C12Q1/686C12Q1/6827G01N21/65C12Q1/6834
CPCB82Y15/00C12Q1/6816B82Y30/00C12Q1/686C12Q2565/632G01N21/65C12Q1/6834C12Q1/6827H04Q11/0005C12Q1/6806C12Q2563/116
Inventor WIN, WEIHU, FANGHAO
Owner THE TRUSTEES OF COLUMBIA UNIV IN THE CITY OF NEW YORK
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