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Nucleoside compounds and their use for treating cancer and diseases associated with somatic mutations

a technology of somatic mutations and nucleoside compounds, which is applied in the field of nucleoside compounds, can solve the problems of large disruption of the genome, many amino acid substitutions do not have a gross effect on protein structure or function, and stop codons can produce aberrant proteins in cells, so as to promote the readthrough of premature stop codons and reduce the amount of active protein produced.

Inactive Publication Date: 2008-04-17
PTC THERAPEUTICS INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0028] Without being limited by theory, the ability of the compounds of the invention to promote readthrough of premature stop codons makes them useful in the treatment or prevention of any disease which is caused in whole or in part by a nonsense mutation. Such diseases can occur due to the decreased amount of active protein produced as a result of premature termination of translation. Without being limited by theory, the compounds of the invention allow the translation of mRNA to continue past the nonsense mutation resulting in the production of full length protein. A powerful aspect of the invention is that the therapeutic activity of compounds of the invention are not necessarily limited to a specific disease, instead are effective at treating or preventing many diseases associated with a nonsense mutation. Further, the methods of the invention include those that are patient specific, that is, a patient can be screened to determine if their disease is associated with a nonsense mutation. If so, they can then be treated with a compound of the invention more efficiently, specifically and effectively.

Problems solved by technology

Mutations of the DNA sequence in which the number of bases is altered are categorized as insertion or deletion mutations (frameshift mutations) and can result in major disruptions of the genome.
These premature stop codons can produce aberrant proteins in cells as a result of premature translation termination.
The inserted amino acid will not necessarily be identical to the original amino acid of the wild-type protein, however, many amino acid substitutions do not have a gross effect on protein structure or function.
One disease for which such a therapeutic strategy may be viable is classical late infantile neuronal ceroid lipofuscinosis (LINCL), a fatal childhood neurodegenerative disease with currently no effective treatment.
However, the use of clitocine as a therapeutic for diseases associated with a nonsense mutation has not been disclosed until now.
Nor has anyone reported the development of an analogue or derivative of clitocine that has utility as a therapeutic for cancer or a disease associated with a nonsense mutation.

Method used

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  • Nucleoside compounds and their use for treating cancer and diseases associated with somatic mutations
  • Nucleoside compounds and their use for treating cancer and diseases associated with somatic mutations
  • Nucleoside compounds and their use for treating cancer and diseases associated with somatic mutations

Examples

Experimental program
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Effect test

example 2

5.2 EXAMPLE 2

Identification and Characterization of Compounds that Promote Nonsense Suppression and / or Modulate Translation Termination

5.2.1. Increase in In Vitro Nonsense Suppression at UGA Codons

[0301] Compounds of the invention can be characterized further with the in vitro luciferase nonsense suppression assay. To ensure that the observed nonsense suppression activity of the selected compounds is not limited to the rabbit reticulocyte assay system, HeLa cell extract is prepared and optimized (Lie & Macdonald, 1999, Development 126(22):4989-4996 and Lie & Macdonald, 2000, Biochem. Biophys. Res. Commun. 270(2):473-481). The nonsense suppression activity of compounds of the invention, with respect to the UGA codon, are compared to gentamicin in the HeLa cell translation extracts.

5.2.2. Characterization of Compounds that Increase Nonsense Suppression and Produce Functional Protein

[0302] A stable cell line harboring the UGA nonsense-containing luciferase gene is treated with a te...

example 3

5.3 EXAMPLE 3

100 Mg Oral Dosage Form

[0315] Table 3 illustrates a batch formulation and a single dose unit formulation containing 100 mg of clitocine.

TABLE 3Formulation for 100 mg tabletPercentQuantityQuantityMaterialby Weight(mg / tablet)(kg / batch)6-Amino-5-nitro-4-(β-D-ribo-40%100.0020.00furanosylamino)pyrimidine(Clitocine)Microcrystalline Cellulose, NF53.5%133.7526.75Pluronic F-68 Surfactant4.0%10.002.00Croscarmellose Sodium Type A,2.0%5.001.00NFMagnesium Stearate, NF0.5%1.250.25Total100.0%250.00 mg50.00 kg

[0316] The microcrystalline cellulose, croscarmellose sodium, and clitocine are passed through a #30 mesh screen (about 430μ to about 655μ). The Pluronic F-68® (manufactured by JRH Biosciences, Inc. of Lenexa, Kans.) surfactant is passed through a #20 mesh screen (about 457μ to about 1041μ). The Pluronic F-68® surfactant and 0.5 kgs of croscarmellose sodium are loaded into a 16 qt. twin shell tumble blender and are mixed for about 5 minutes. The mix is then transferred to a 3 c...

example 4

5.4 EXAMPLE 4

Aerosol Dosage Form

[0317] A concentrate is prepared by combining clitocine and a 12.6 kg portion of the trichloromonofluoromethane in a sealed stainless steel vessel equipped with a high shear mixer. Mixing is carried out for about 20 minutes. The bulk suspension is then prepared in the sealed vessel by combining the concentrate with the balance of the propellants in a bulk product tank that is temperature controlled to 21° to 27° C. and pressure controlled to 2.8 to 4.0 BAR. 17 ml aerosol containers which have a metered valve which is designed to provide 100 inhalations of the composition of the invention. Each container is provided with the following:

ipratropium bromide,0.0021g6-Amino-5-nitro-4-(β-D-ribofuranosylamino)pyrimidinetetrahydro-furan-3,4-diol0.0120gtrichloromonofluoromethane1.6939gdichlorodifluoromethane3.7028gdichlorotetrafluoroethane1.5766gtotal7.0000g

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Abstract

The invention encompasses nucleoside compounds, compositions comprising the compounds and methods for treating or preventing diseases associated with nonsense mutations of mRNA by administering these compounds or compositions.

Description

[0001] This application is a divisional of U.S. application Ser. No. 10 / 625,059, filed Jul. 22, 2003, allowed, which claims the benefit of U.S. provisional application No. 60 / 398,334, filed on Jul. 24, 2002, the disclosures of which are incorporated by reference herein in their entireties.1. FIELD OF INVENTION [0002] The invention encompasses nucleoside compounds, compositions comprising the compounds and methods for treating or preventing diseases associated with nonsense mutations of mRNA by administering these compounds or compositions. 2. BACKGROUND OF THE INVENTION [0003] Gene expression in cells depends upon the sequential processes of transcription and translation. Together, these processes produce a protein from the nucleotide sequence of its corresponding gene. [0004] Transcription involves the synthesis of mRNA from DNA by RNA polymerase. Transcription begins at a promoter region of the gene and continues until termination is induced, such as by the formation of a stem-loo...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): A61K31/706A61P35/00C07H19/00
CPCC07H19/00A61P35/00
Inventor WILDE, RICHARDKENNEDY, PAULALMSTEAD, NEILWELCH, ELLENTAKASUGI, JAMESFRIESEN, WESTLEY
Owner PTC THERAPEUTICS INC
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