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Recombinant cells that highly express chromosomally-integrated heterologous genes

a heterologous gene and recombinant cell technology, applied in the field of recombinant host cells, can solve the problems of inefficient utilization of expensive sugar substrates, relatively expensive sources of biomass sugars, and become more toxic upon accumulation, so as to reduce the production of acid, impair the recombination in the cell, and reduce the production of succinate.

Inactive Publication Date: 2007-07-26
UNIV OF FLORIDA RES FOUNDATION INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The present invention relates to a method for obtaining recombinant host cells that produce desired polypeptides at high levels. This is achieved by integrating a heterologous DNA segment containing the genes for the polypeptides into the host cell chromosome under the control of a strong promoter. The method also includes steps of selecting host cells with increased expression of the integrated DNA segment and mutating the host cell chromosome to further increase expression. The resulting recombinant host cells have stable expression of the integrated DNA segment and produce high levels of the desired polypeptides. The invention also provides a cell strain that contains a chromosome with a plurality of genes integrated into it. The method and cell strain can be used for efficient production of valuable products from biomass fermentation.

Problems solved by technology

They are relatively nontoxic under the conditions in which they are initially produced but become more toxic upon accumulation.
However, these are relatively expensive sources of biomass sugars and have competing value as foods.
For conventional ethanol-producing microorganisms, this biomass has limited commercial value at best, for instance, as a nutritional supplement, and therefore, represents inefficient utilization of the expensive sugar substrate.
No known organism in nature can rapidly and efficiently metabolize all of these sugars, particularly the pentoses, into ethanol or any other single product of value.
However, under anaerobic fermentation conditions, these organisms convert sugars to a mixture of soluble products, including small amounts of ethanol, that cannot be separated economically.
Thus, such enteric bacteria efficiently utilize the entire range of biomass-derived sugars but fail to produce a product of sufficient yield and uniformity to be commercially valuable.
Although Z. mobilis is nutritionally simple and capable of synthesizing amino acids, nucleotides and vitamins, the range of sugars metabolized by this organism is very limited and normally consists of glucose, fructose and sucrose.
Z. mobilis is incapable of growth without a fermentable sugar even in rich medium such as nutrient broth.
However, the exogenous genes were not completely stable because of the inherent instability of plasmids in the absence of selective pressure to ensure their retention in the host cell.
Due to plasmid incompatibilities, moreover, the use of a typical E. coli expression plasmid for the ethanol-production genes precludes the most convenient means for introduction into a basic commercial ethanol-producer strain of additional exogenous genes for production of other selected products, such as valuable proteins.

Method used

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  • Recombinant cells that highly express chromosomally-integrated heterologous genes
  • Recombinant cells that highly express chromosomally-integrated heterologous genes
  • Recombinant cells that highly express chromosomally-integrated heterologous genes

Examples

Experimental program
Comparison scheme
Effect test

example 1

Construction of Integration Plasmids Containing E. coli Pyruvate Formate-Lyase Gene

[0097] The following materials and methods were used throughout the present examples unless otherwise stated. E. coli TC4 was used for all genetic constructions. See Conway, T., Y. A. Osman, J. I. Konnan, E. M. Hoffman, and L. O. Ingram [1987] J. Bacteriol. 169: 949-954. Luria broth containing the appropriate selective antibiotic and the indicated concentrations of glucose was used in all growth experiments. Antibiotics were used in the following final concentrations except as noted: ampicillin, 50 μg / ml; chloramphenicol (Cm), 20 μg / ml or 600 μg / ml, as indicated; tetracycline, 12.5 μg / ml. ADH indicator plates containing the Schiff reagent were used to detect aldehyde produced from ethanol by recombinant E. coli expressing ADHII of Z. mobilis. Conway, T., G. W. Sewell, Y. A. Osman, and L. O. Ingram [1987] J. Bacteriol. 169: 2591-2597.

[0098] Standard procedures were used for plasmid preparation, restr...

example 2

Construction of Integration Plasmids Containing E. coli Pyruvate Formate-Lyase Gene and Temperature-Sensitive for Plasmid Replication

[0101] Plasmid pLOI295 was digested with EcoRI and SalI, and the 3.2-kb EcoRI-SalI fragment carrying pdc and adhB genes was treated with Klenow fragment of DNA polymerase to produce blunt ends. This blunt-ended fragment was ligated into the Klenow-treated BamHI site of pLOI513 carrying the incomplete pfl gene in the same orientation with respect to transcription to give pLOI542. pLOI542 was then digested with SalI and the 7.2-kb SalI fragment was ligated to SalI site in the polylinker of pMAK705, see Hamilton, C. M., M. Aldea, B. K. Washburn, P. Babitzke, and S. R. Kushner [1989] J. Bacteriol. 171: 4617-4622, containing the temperature-sensitive replicon and Cmr gene (FIG. 2). The resultant plasmid pLOI543 was introduced into the E. coli chromosome by homologous recombination (see Example 3 below).

example 3

Chromosomal Integration in E. coli B of Z. mobilis pdc and adhB Genes with Loss of an Associated Antibiotic Resistance Gene

[0102] The recombinant plasmid pLOI543, which replicates at 30° C., but not at 44° C., was used to transform E. coli B with the Cmr gene to give it resistance to chloremphenicol. Transformed cells were grown at 44° C. in 100 ml Luria broth containing 20 μg / ml chloramphenicol and 5% (w / v) glucose for 24 hours to select for integration of the plasmid into the chromosome. A portion (0.1 ml) of this culture was diluted, and 0.1 ml of the diluted cell suspension was used to inoculate 100 ml of Luria broth containing 5% (w / v) glucose without chloramphenicol. The culture was grown at 30° C. for 12 hours to allow excision. Two or more cycles of growth were carried out by diluting a portion (0.1 ml) of the culture and inoculating into 100 ml of fresh medium. A diluted cell suspension of the 12-hour culture was then used to inoculate Luria broth containing 5% (w / v) gluco...

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Abstract

Recombinant host cells are obtained that comprise (A) a heterologous, polypeptide-encoding polynucleotide segment, stably integrated into a chromosome, which is under transcriptional control of an endogenous promoter and (B) a mutation that effects increased expression of the heterologous segment, resulting in enhanced production by the host cells of each polypeptide encoded by that segment, relative to production of each polypeptide by the host cells in the absence of the mutation. The increased expression thus achieved is retained in the absence of conditions that select for cells displaying such increased expression. When the integrated segment comprises, for example, ethanol-production genes from an efficient ethanol producer like Zymomonas mobilis, recombinant Escherichia coli and other enteric bacterial cells within the present invention are capable of converting a wide range of biomass-derived sugars efficiently to ethanol.

Description

[0001] This application is a continuation-in-part of co-pending application Ser. No. 07 / 352,062 (filed May 15, 1989), which is a continuation-in-part of application Ser. No. 07 / 239,099 (filed Aug. 31, 1988), now abandoned.[0002] Work relating to this invention was supported in part by Grant FG05-86ER3574 from the Office of Basic Energy Science, U.S. Department of Energy, and in part by Grant 88-37233-3987 from the Alcohol Fuels Program, U.S. Department of Agriculture. The U.S. Government has certain rights in the invention.BACKGROUND OF THE INVENTION [0003] The present invention relates to recombinant host cells that comprise a heterologous, polypeptide-encoding polynucleotide segment which is stably integrated into a chromosome and which is under control of an endogenous promoter. When the integrated segment comprises, for example, ethanol-production genes from an efficient ethanol producer like Zymomonas mobilis, recombinant Escherichia coli and other enterobacterial cells within ...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12N1/21C12N15/74
CPCC12N9/1029C12Y203/01054C12N15/74C12N15/67
Inventor INGRAM, LONNIE O.OHTA, KAZUYOSHIWOOD, BRENT E.
Owner UNIV OF FLORIDA RES FOUNDATION INC
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