Primer combination for PCR (Polymerase Chain Reaction) identification of zaocys dhumnade medicinal material, standard decoction and traditional Chinese medicine formula granules as well as application and identification method of primer combination
A combination technology of traditional Chinese medicine formula granules and primers, which is applied in biochemical equipment and methods, recombinant DNA technology, microbial measurement/inspection, etc., can solve the problems of DNA loss of form and difficulty in identification, and achieve the effect of overcoming the interference of excipients
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Embodiment 1
[0067] Example 1 Primer Design
[0068] Based on the NADH; Cytochrome Oxidase I; 12S rRNA; 16S rRNA; Cytochrome b sequence analysis of the Chinese Pharmacopoeia 2020 edition, the Cytochrome Oxidase I sequences of common snake species in the GeneBank database were homologous using BioEdit software Align and proofread the specific SNP site of the snakehead snake, and import the base sequence containing the SNP site into Primer Premier 5 software for primer design.
[0069] After the sequence comparison, it was found that the specific site of the black snake is T and the other is A or C. After determining the SNP site, make the SNP site close to the 3' end of the forward primer, and adjust the primer score by moving the upstream primer position. GC content, and with the help of PrimerPremier 5 software, the position of the reverse primer was further adjusted, and the optimal combination was determined by the final primer score and the product band score. In the design process, i...
Embodiment 2
[0072] Example 2 Establishment of identification method
[0073] (1) DNA extraction and concentration adjustment
[0074]Take 0.5 g of the dried sample, grind it into powder, put it in a 2 mL centrifuge tube, add 1.5 mL of CTAB precipitation solution preheated at 65 °C, 20 μL of proteinase K, mix well, heat it in a water bath at 65 °C for 60 min, cool it to room temperature, and use 10000 r Centrifuge at / min for 5 min, discard the supernatant, add 900 μL CTAB precipitation solution and 20 μL proteinase K, and operate in the same way. Add 900 μL of LCTAB extract and 10 μL of β-mercaptoethanol to the centrifuge tube in turn, mix well, heat in a water bath at 65°C for 120 min, centrifuge, and cool down to room temperature to take the supernatant; add an equal volume of chloroform-isoamyl alcohol (24:1 ), shake for 3 minutes, and mix well; centrifuge at 12000 r / min at 4°C for 10 minutes, take 750 μL of the supernatant into a new 2 mL centrifuge tube, add an equal volume of chlor...
Embodiment 3
[0086] Embodiment 3 Identification method verification
[0087] 14 snake samples of known species were selected (specifically shown in Table 1).
[0088] The samples were identified using the identification method established in Example 2. Among them, in the PCR system, the amount of DNA template is 50ng.
[0089] Table 1 Sample Sheet
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[0091]
[0092] Identification results such as figure 1 As shown in the figure, it can be seen from the figure that there is a 135bp band in the Wushao snake medicinal material, the Wushao snake standard decoction (lyophilized powder), and the Wushao snake traditional Chinese medicine formula granules; while other samples did not get this band. This result shows that the accuracy rate of the identification method in the present invention reaches 100%.
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