A Method for Detecting and Analyzing Fetal Chromosome Ploidy Based on Multiple Indexes
A chromosomal ploidy and analysis method technology, applied in the field of fetal chromosomal ploidy detection and analysis based on multiple indicators, can solve the problems of increasing false negative results, difficult to judge gray areas, and ineffective presentation of data information, etc., to achieve reliable and accurate results Effect
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[0061] In order to realize the object of the present invention, the present invention comprises five major steps: (1) quality control step; (2) fetal DNA content estimation step; (3) calculation Z, ZZ, BM statistical index step; (4) output chart step; ( 5) Result evaluation step. Specific as figure 1 shown.
[0062] (1) Quality control steps
[0063] (1.1) Use FastQC to view the sequencing quality results, view sequence sequencing score distribution, GC distribution and repetition rate; count the total number of reads, total base number, sequence length, Q20, Q30, GC content, N of all sequences Quantity, Q20%, Q30%, GC% content, N%.
[0064] (1.2) Use AdapterRemoval to remove the linker sequences contained in the 5' and 3' ends of the sequence.
[0065] (1.3) In this step, the program Seqtk is used to trim the index at the beginning and end of the sequence or the sequence with poor sequencing quality.
[0066] (1.4) Use the sliding window to filter low-quality base sequen...
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