Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Aneuploidy biological information analysis method and system

A correction method and a biased technology, applied in the field of biomedicine, can solve problems such as ineffective detection, false positives, and large impact of sequencing batches

Active Publication Date: 2017-09-05
BEIJING HOSPITAL +1
View PDF4 Cites 15 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, the existing NIPT detection technology has the following disadvantages: 1) When the concentration of fetal DNA is low, it is impossible to accurately determine chromosomal abnormalities, which may easily cause false negatives; 2) It can only detect autosomes such as chromosomes 13, 18, and 21 It is difficult to effectively determine sex chromosomes; 3) It is suitable for single births, and cannot effectively detect twins or even multiple births; 4) It is greatly affected by the sequencing batch, and it is easy to cause false positives; 5.) No Suitable for fetal DNA detection of maternal abnormalities (chromosomal micro-deletions and micro-duplications), which can easily cause false positives

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Aneuploidy biological information analysis method and system
  • Aneuploidy biological information analysis method and system
  • Aneuploidy biological information analysis method and system

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0115] 1) Construction of a reference database: Select 1500 samples from pregnant women with gestational weeks greater than or equal to 12 weeks and no chromosomal abnormalities in karyotype analysis as the control sample library. Among them, there is no significant difference in the number of samples from pregnant women with male and female fetuses.

[0116] Berry Hekang's Fetal Chromosomal Aneuploidy (T13 / T18 / T21) Detection Kit (Reversible Terminal Termination Sequencing Method) was used to construct the NIPT library. The specific steps are as follows:

[0117] (1) Cell-free plasma DNA was taken from 7 pregnant women, numbered Y1-Y7. Karyotype analysis showed that 2 cases were negative samples (Y6, Y7), 1 case was trisomy 21 (Y1), and 1 case was 18 Chromosome trisomy (Y2), 1 case of chromosome 13 trisomy (Y3), 1 case of X chromosome trisomy (Y5), 1 case of chromosome 15 maternal microduplication (Y4), add the reaction system according to Table 1 Components:

[0118] Table 1...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

The invention discloses an aneuploidy biological information analysis method and system, wherein the method comprises: 1) constructing a reference database; 2) calculating UR ratio; 3) constructing statistical parameters of the reference database; 4) calculating Z value; 5) decreasing fetal chromosomal aneuploidy false positives due to microdeletion or micro-duplication present in maternal chromosomes according to the above process of decreasing fetal chromosomal aneuploidy false positives due to microdeletion or micro-duplication present in maternal chromosomes; 6) constructing a fetal DNA concentration prediction model to predict fetal DNA concentration according to the above process of constructing a fetal DNA concentration prediction model; 7) calculating percentage of DNA of each fetal chromosome to total DNA; 8) judging autosomal aneuploidy; 9) judging allosomal anomalies. By using the method and system according to the technical scheme, analytical accuracy is improved greatly.

Description

technical field [0001] The invention relates to the field of biomedical technology, in particular to an analysis method and analysis system for aneuploidy biological information. Background technique [0002] Prenatal diagnosis refers to the use of non-invasive or invasive means to examine the fetus, which can be diagnosed in the first or second trimester for early intervention or treatment. Among them, invasive methods include: chorionic villus biopsy, amniocentesis and transabdominal umbilical vein puncture and so on. Although the result is more accurate, it has a very high risk, and it is easy to cause miscarriage or intrauterine infection in pregnant women. Although prenatal screening methods (peripheral blood biochemical screening and ultrasound cervical translucency) do not use invasive methods, the detection rate and false positive rate cannot reach the desired level. NIPT, referred to as non-invasive prenatal testing, is a technology used in prenatal testing during...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
IPC IPC(8): G06F19/20G06F19/22G06F19/24G06F19/28
CPCG16B25/00G16B30/00G16B40/00G16B50/00
Inventor 王少为徐寒黎王伟伟张静波刘斐然刘倩刘珂弟唐宇
Owner BEIJING HOSPITAL
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products