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Compositions and methods of treating cancer

a cancer and composition technology, applied in the field of biochemical science, can solve the problems of many patients becoming resistant to any therapy, no effective treatment option, limited long-term survival effect of treatments,

Inactive Publication Date: 2010-10-28
ONCOTHERAPY SCI INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0058]In non-mammalian cells, double-stranded RNA (dsRNA) has been shown to exert strong and specific silencing effect on gene expression, which is referred to as RNA interference (RNAi) (Sharp P A, Genes Dev 1999 Jan. 15, 13(2): 139-41). A dsRNA is processed into 20 to 23 nucleotides, called small interfering RNA (siRNA), by an enzyme containing RNase III motif. The siRNA specifically targets complementary mRNA with a multicomponent nuclease complex (Hammond S M et al., Nature 2000 Mar. 16, 404(6775): 293-6; Hannon G J, Nature 2002 Jul. 11, 418(6894): 244-51). In mammalian cells, siRNA composed of 20 or 21-mer dsRNA with 19 complementary nucleotides and 3′ terminal non-complementary dimmers of thymidine or uridine, have been shown to possess gene specific knock-down effect without inducing global changes in gene expression (Elbashir S M et al., Nature 2001 May 24, 411(6836): 494-8). In addition, plasmids containing small nuclear RNA (snRNA) U6 or polymerase III H1-RNA promoter effectively produce such short RNA recruiting type III class of RNA polymerase III and thus can constitutively suppress its target mRNA (Miyagishi M & Taira K, Nat Biotechnol 2002 May, 20(5): 497-500; Brummelkamp T R et al., Science 2002 Apr. 19, 296(5567): 550-3, Epub 2002 Mar. 21).
[0241]Stealth liposomes are known to accumulate in tissues fed by porous or “leaky” microvasculature. Thus, target tissue characterized by such microvasculature defects, for example, solid tumors, will efficiently accumulate these liposomes; see Gabizon et al., Proc Natl Acad Sci USA 1988, 18: 6949-53. In addition, the reduced uptake by the RES lowers the toxicity of stealth liposomes by preventing significant accumulation in liver and spleen. Thus, liposomes of the invention that are modified with opsonization-inhibition moieties can deliver the present double-stranded nucleic acid molecule to tumor cells.

Problems solved by technology

Because most PDAC patients are diagnosed at an advanced stage, none of the available therapies are effective.
However, these treatments show only limited effect on long-term survival because PDACs are extremely aggressive and chemo-resistant.
It is well-known that SCLC initially may be sensitive to chemo- and radiotherapy, but unfortunately, many of them will become resistant to any therapy.
While these agents are of significant clinical value, the major limitation of endocrine therapy remains the nearly universal development of chemo-resistance.
Unfortunately, ER-negative breast cancers tend to be more aggressive as well as unresponsive to anti-estrogens (Goldhirsch A et al., J Clin Oncol 2003 Sep. 1, 21(17): 3357-65, Epub 2003 Jul. 7).
However, unresectable and relapsed esophageal cancers can be resistant to presently available chemotherapy or radiation therapy regimens, and there is almost no clear advantage of these regimens on overall survival.
However, they often acquire androgen-independent phenotype and show no or very poor response to the androgen ablation therapy.
No effective anticancer drug or therapy is presently available to the advanced or recurrent androgen-independent prostate cancer.
However, a specific therapeutic target for seminoma has not been identified.
Today, it continues to defy diagnosis and treatment.
It is difficult to diagnose in part because of its relative rarity, and because it is clinically silent until it becomes advanced disease with obstructive symptoms.
Colon cancer is a leading cause of cancer deaths in developed countries.
While many small colorectal polyps are benign, some types may progress to cancer.
However, this method is limited in that it yields subjective results and can not be used for very early detection of pre-cancerous states.

Method used

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  • Compositions and methods of treating cancer
  • Compositions and methods of treating cancer
  • Compositions and methods of treating cancer

Examples

Experimental program
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example 2

Screening of Up-Regulated Genes in Clinical Cancer Samples with No or Low Expression in Normal Organs

[0316]cDNA microarray analyses was carried out as described previously (Zembutsu H et al., Cancer Res 2002 Jan. 15, 62(2): 518-27; Nishidate T et al., Int J Oncol 2004 October, 25(4): 797-819). By comparing expression patterns between cancer tissues and corresponding normal epithelia, genes commonly up-regulated in the clinical cancer tissues were selected. Next, semi-quantitative RT-PCR analysis was performed to select cancer-specific genes which were detected to be highly expressed in cancer cell lines but not in corresponding normal organs and normal vital organ (FIG. 1). Genes highly expressed in normal organs were eliminated to avoid suppositious induction of fatal side effects when used as target genes to be inhibited in therapy.

example 3

Design of Customized siRNA for Candidates

[0317]SiRNA sequences for each candidate genes were designed using siRNA design tool available on Ambion, Inc. website (http: / / www.ambion.com / techlib / misc / siRNA_finder.html) (Tuschl T et al., Genes Dev 1999 Dec. 15, 13(24): 3191-7) to select the candidate sequences of the siRNAs. Each of the siRNAs were introduced into cancer cells and control cells, and evaluated for their relative cell viability to obtain sequences that is most effective in suppressing cell growth (Table 1).

TABLE 1Designed siRNA sequences against the four candidate genesSEQTargetsiRNA IDGeneNameStrandSequenceNOC14C8target5′-GATATGCCATCCCAGATTT-3′47orf78Sense5′-GAUAUGCCAUCCCAGAUUUUU-3′25Anti-5′-AAAUCUGGGAUGGCAUAUCUU-3′26senseC10target5′-GTCAAATTCCCCAAATTAA-3′48Sense5′-GUCAAAUUCCCCAAAUUAAUU-3′27Anti-5′-UUAAUUUGGGGAAUUUGACUU-3′28senseC11target5′-GTGTCCAGAGGCCAATATT-3′49Sense5′-GUGUCCAGAGGCCAAUAUUUU-3′29Anti-5′-AAUAUUGGCCUCUGGACACUU-3′30senseC24target5′-GGCAGGGCTCCAAAAGACA-3′50...

example 4

Optimization of Gene-Specific siRNAs and Evaluation of their Silencing Specificity

[0318]C14orf78 is a therapeutic target for pancreatic cancer because it is over-expressed (T / N ratio>=5) in clinical samples; 11 of 18 pancreatic cancers, 14 of 25 cholangiocellular carcinomas, and 10 of 37 non-small cell lung cancers (Table 2). All of the optimized siRNAs for C14orf78 (C8, C10, C11 and C24) effectively knocked down gene expression in PK-1 and Panc.02.03 coincided with suppression of cell proliferation (FIGS. 2a, b). The present inventors further examined the activation of interferon pathway by double-stranded RNA (dsRNA) against the gene. Interferon induced transmembrane protein 1 (IFITM1) is an index of interferon response resulting in undesired non-specific cell death by the infection of double-stranded RNAs. In this invention, the expression of IFITM1 was almost concordantly unchanged (FIGS. 2a, b). Furthermore, the proliferation of SK-BR-3, which is a cell line expressing low leve...

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Abstract

The invention features a method for treating cancer by administering a double-stranded nucleic acid molecule against a CX gene selected from the group consisting of C14orf78, MYBL2, UBE2S and UBE2T. The invention also features products, including the double-stranded nucleic acid molecules and vectors encoding them, as well as compositions comprising the molecules or vectors, useful in the provided methods. The methods of the invention are suited for the treatment of cancers including lung cancer, breast cancer, bladder cancer, esophagus cancer, prostate cancer, cholangiocellular carcinoma and testicular seminoma.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS[0001]The present application claims the benefit of U.S. Provisional Application No. 60 / 937,616, filed Jun. 27, 2007, the entire disclosure of which is hereby incorporated herein by reference.TECHNICAL FIELD[0002]The present invention relates to the field of biological science, more specifically to the field of cancer research. In particular, the present invention relates to a double-stranded nucleic acid molecule which inhibits the expression of a CX gene selected from the group of C14orf78, MYBL2, UBE2S and UBE2T genes, and a composition comprising the same. The present invention further relates to methods of treating cancer using the molecules or compositions.BACKGROUND ARTPancreatic Cancer (Pancreatic Ductal Adenocarcinoma)[0003]Pancreatic ductal adenocarcinoma (PDAC) is the forth leading cause of cancer death in the Western world and shows one of the worst mortality rates among malignancies, with a 5-year survival rate of only 4% (DiMagno ...

Claims

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Application Information

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IPC IPC(8): A61K31/713C07H21/00C12N15/63A61P35/00
CPCC12N2310/14C12N15/113A61P35/00
Inventor TOGASHI, AKIRATOBITA, RYUTAROISHIZAKI, YUKAKONUMA, AKIKO
Owner ONCOTHERAPY SCI INC
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