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Kit of double RPA detection of aphthovirus and vesicular stomatitis virus

A technology for vesicular stomatitis and foot-and-mouth disease virus, which is applied in the field of dual RPA detection primer sets, can solve the problems of impossibility of design and implementation, strict requirements, etc., and achieve the effect of fast detection speed, low requirements, and optimized reaction system

Active Publication Date: 2021-06-04
NORTHWEST A & F UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, the detection of FMDV and VSV at the same time mainly involves gene chip and PCR technology, and there is no report involving RPA technology
Compared with PCR, RPA has more stringent requirements on primer design, which cannot be realized completely according to software design. Screening effective specific amplification primers and reaction conditions is a difficult problem in realizing multiple RPA detection.

Method used

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  • Kit of double RPA detection of aphthovirus and vesicular stomatitis virus
  • Kit of double RPA detection of aphthovirus and vesicular stomatitis virus
  • Kit of double RPA detection of aphthovirus and vesicular stomatitis virus

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Embodiment Construction

[0035] The present invention will be described in further detail below in conjunction with the accompanying drawings and embodiments. The examples are only used to explain the present invention, not to limit the protection scope of the present invention.

[0036] 1. Primer design and screening

[0037] (1) Collect the whole genome sequences of foot-and-mouth disease virus (FMDV) and vesicular stomatitis virus (VSV) in GeneBank, and use MegAlign to compare and analyze the sequences (FMDV has 52 whole genome sequences, VSV has 16 The entire genome), select the conserved and specific region within the species as the detection target gene of each virus, further compare the conserved gene sequence, determine the candidate region of the gene sequence to be amplified, and then design primers based on the determined gene sequence. Among them, FMDV selects the 3D gene region, and VSV selects the N gene region for RPA primer design.

[0038] The following primer screening principles a...

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Abstract

The invention discloses a kit of double RPA detection of aphthovirus and vesicular stomatitis virus. The kit includes an aphthovirus RPA detection primer set consisting of nucleotide sequences shown as SEQ. ID. NO. 1 and SEQ. ID. NO. 6 and a vesicular stomatitis virus RPA detection primer set consisting of nucleotide sequences shown as SEQ. ID. NO. 8 and SEQ. ID. NO. 11. Based on a recombinase polymerase amplification method, the kit takes the cDNA formed by RNA reverse transcription as a template and performs amplification reaction under optimized reaction temperature and time, and detection results can be obtained through nucleic acid gel electrophoresis. The kit can be used to simultaneous detect aphthovirus and vesicular stomatitis virus, is simple in operation and has high sensibility and specificity, therefore rapid detection kit can be provided for on-site screening of pathogens.

Description

technical field [0001] The invention relates to the field of viral nucleic acid detection, in particular to a double RPA detection primer set, kit and detection method for foot-and-mouth disease virus and vesicular stomatitis virus. Background technique [0002] Foot-and-mouth disease virus (FMDV) is a member of the genus FMDV in the Picornaviridae family and mainly infects cattle, sheep, pigs and other animals. Vesicular stomatitis virus (VSV) is a member of the Rhabdoviridae Vesicularvirus genus and is an enveloped, non-segmented, negative-sense RNA virus. Both vesicular stomatitis and foot-and-mouth disease can cause vesicular lesions on the oral mucosa, nipple skin, and hoof crown skin of animals. The clinical symptoms are similar and it is difficult to distinguish them. Because it is difficult to distinguish between foot-and-mouth disease and vesicular stomatitis clinically, and these two viruses have brought great harm to the breeding industry and have a serious impac...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/6844C12N15/11C12R1/93
CPCC12Q1/701C12Q1/6844C12Q2600/16C12Q2521/507C12Q2537/143C12Q2565/125Y02A50/30
Inventor 赵晓民童德文王凯丽郭建雄
Owner NORTHWEST A & F UNIV
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