Primer combination for detecting instability of microsatellite, kit, detection method and application of primer combination, kit and detection method
A primer composition and instability technology, which can be used in biochemical equipment and methods, recombinant DNA technology, and the determination/inspection of microorganisms, and can solve problems such as the impact of result analysis
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Embodiment 1
[0097] Embodiment 1 Primer Design and the Preparation of Primer Combination Mixture
[0098] In this example, according to the standards recommended by the National Cancer Institute of the United States and the recommendations of the "Revised Bethesda Guidelines", six single nucleotide polymorphism sites NR-21, NR-24, NR-27, BAT-25, and MONO-27 were determined , BAT-26, and three control polymorphic sites Penta D, Penta E, and Amel, using Primer Premier 5.0 to design specific primers according to the GenBank sequence information of 9 sites, and artificially synthesized according to existing methods, Obtain the primer composition shown in SEQID NO:1~18;
[0099] The 9 pairs of synthesized primers were added to nucleic acid-free water and dissolved to 100 μM: taking NR-21 as an example, take 5 μL of forward primer, 5 μL of reverse primer and 40 μL of nucleic acid-free water to prepare NR-21 primer working solution with a concentration of 10 μM; The other 8 pairs of primers were...
Embodiment 2
[0103] Example 2 kit assembly
[0104] The kit of this embodiment contains 4 components: enzyme mixture, PCR reaction solution, dNTP and primer combination mixture containing 9 polymorphic sites, the specific components are shown in Table 2:
[0105] Table 2
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[0107]
Embodiment 3
[0108] Example 3 Sample Detection
[0109] In this embodiment, taking the paraffin-embedded tumor tissue of a patient with colorectal cancer (patient number HP001) as an example, the kit of Example 2 was used to detect the state of microsatellite instability in the tumor tissue, including the following steps:
[0110] (1) Extract the DNA of the paraffin-embedded tumor tissue sample of the patient HP001 and the white blood cell gDNA of the blood sample as a control sample, and use Qubit 2.0 to detect the sample concentration. The DNA concentration of the tissue sample is 20.4 ng / μL, and the white blood cell gDNA concentration is 56.4 ng / μL;
[0111] (2) Prepare a PCR reaction system according to Table 3, and add a prepared 47 μL PCR reaction system to each detection system;
[0112] table 3
[0113] components Volume / μL Enzyme Mix 1.05 PCR reaction solution 2.1 dNTPs 8.4 primer mix mix 5.25 nuclease free water 73.5
[0114] (3) Di...
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