Primer set, chip and kit for genotyping detection of alpha thalassemia and beta thalassemia
A thalassemia, primer set technology, applied in recombinant DNA technology, microbial determination/inspection, biochemical equipment and methods, etc., can solve problems such as large sample volume, large sample storage space, and easy contamination.
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Embodiment 1
[0118] Embodiment 1: Using the kit specimen source and PCR template type of the present invention
[0119] 1.1 Sample collection and preparation of PCR template: a) Sample collection: Specimens are derived from anticoagulated peripheral blood, DBS samples, embryonic villi tissue, amniotic fluid or umbilical cord blood, embryonic genetic material including gametes such as sperm or eggs, cleavage-stage embryos Blastomeres, blastocyst trophectoderm cells, ie, blastocyst cells, etc.; b) Preparation of PCR templates: the above samples can be directly used as templates, or DNA extracted from the above samples by nucleic acid can also be used as templates.
[0120] 1.2 DBS sample preparation
[0121] The above 1.1 filter paper dry blood spot sample (DBS) collection and preparation are as follows:
[0122] ①. Use Whatman903 filter paper (or ordinary filter paper). Mark the subject number and date of collection on the filter paper. ② Both peripheral blood and anticoagulated blood ca...
Embodiment 2
[0124] Example 2. Design of specific primers for PCR amplification and determination of PCR reaction system
[0125] 1.1 Primer design
[0126] The α-globin and β-globin gene sequences were obtained from the GenBank database, and a primer set was designed for PCR amplification according to the mutation regions covered by the α-globin and β-globin genes, and 3 pairs of primer combinations were placed in Perform direct multiplex PCR in the same reaction tube to simultaneously amplify the α-thalassemia non-deletion mutation and the β-thalassemia gene mutation; another primer set is also placed in another reaction tube for direct multiplex PCR amplification of the deletion α-thalassemia; primers were synthesized by a professional biological company. Primer sequences are shown in Table 3,
[0127] Table 3 Specific primers in PCR reaction solution Ⅰ and PCR reaction solution Ⅱ
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[0129] 1.2 Determination of multiplex PCR reaction system
[0130] Using the orthogonal t...
Embodiment 3
[0151] Example 3: Design, spotting and immobilization of oligonucleotide probes
[0152] 3.1. Design and screening of probes
[0153] The α-globin gene sequence was obtained from the GenBank database, and 7 kinds of α-thalassemia mutations (QS, CS, WS, -- SEA 、-- THAI , -α 3.7 and-alpha 4.2 ) and 19 kinds of oligonucleotide probe combinations for β-thalassaemia gene mutations; and design a chromogenic control probe (CC) (Table 6 and Table 7). Synthesized by a professional biological company.
[0154] Table 6 Region-specific probes for β-thalassemia gene mutation
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[0157] Table 7 Region-specific probes for α-thalassemia gene mutation
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[0160] 3.2. Preparation of gene chip.
[0161] The preparation method of the gene chip of the present invention comprises the following steps:
[0162] (1) Preparation of the working solution of the oligonucleotide probe: use the probe diluent (0.5M Na 2 CO 3 and 0.5M NaHCO 3 solution) we...
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