The method, primers and probes for identification of Dalbergia broadleaf in redwood by pcr technology
An identification method and broadleaf technology are applied in the field of molecular biology detection of wood species identification to achieve the effects of controlling cost, improving sensitivity and ensuring specificity
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Embodiment 1
[0031] Example 1 Detection of primers, probes and detection kits for Dalbergia broadleaf
[0032] Using resource information such as NCBI to find out the gene difference sites between Dalbergia broadleaf and other woods, screen out a pair of specific amplification primers (KYHT Primer-F and KYHT Primer-R), and use the primer pair to amplify A specific probe (KYHT Primer Probe) was set for the growth region. The amplification primer pair and the probe sequence are respectively:
[0033] KYHT Primer-F: 5'-GTGGATTCAGCGCCATGAC-3'
[0034] KYHT Primer-R: 5'-GGTCGCGCGCATGACT-3'
[0035] KYHT Primer Probe: 5'-VIC-TTGAGCATCTCCTC-MGB-3'.
[0036] A kit for detecting Dalbergia broadleaf, said kit comprising sample DNA extraction reagents, qPCR amplification reaction solution, positive control substance, negative control substance and blank control substance.
[0037] Wherein the qPCR amplification reaction system is: 20 µl system includes:
[0038] SYBR Prmix Taq Ⅱ (2×) 10µl
[00...
Embodiment 2
[0051] Embodiment 2: the identification method of real-time fluorescent PCR
[0052] (1) Pretreatment of wood samples:
[0053]Thoroughly disinfect the wood surface with 75% ethanol, rinse with sterile water and wipe the wood dry. Cut off the surface of the wood to be tested to avoid contamination by other organizations. Take a certain amount of wood samples, add liquid nitrogen and quartz sand to a pre-cooled mortar and grind them into powder for later use. When not used immediately, the sample DNA solution was stored at -20°C until use.
[0054] (2) DNA extraction of wood samples:
[0055] The total DNA of the pretreated wood in step (1) was extracted using Plant Genomic DNA Kit (TIANGEN), and placed in a -40°C refrigerator for later use.
[0056] (3) Real-time fluorescent PCR amplification:
[0057] The DNA extracted in step (2) was subjected to qPCR detection. The amplification conditions are: 95°C, 2min; 95°C for 15s, 55°C for 34s, a total of 40 cycles. The qPCR am...
Embodiment 3
[0064] Embodiment 3: DNA extraction and detection
[0065] Extract broad-leaved Dalbergia (experimental group 1), control group: knife-shaped black Dalbergia, black Dalbergia, fragrant Dalbergia, East African Dalbergia, Brazilian Dalbergia, Amazon Dalbergia, Belize Dalbergia, Dalbergia chinensis, Dalbergia barry, Dalbergia saichuan, Dalbergia cochinchinensis, Dalbergia tomentosa, Central American Dalbergia, Dalbergia austenifolia, and Dalbergia dentata, a total of 15 control genomic DNAs were used as templates, using the plant The source gene tRNALeu and the reaction system of Example 1 and the detection method described in Example 2 are used to detect the extracted DNA.
[0066] The primer and probe sequences of tRNALeu are (standard):
[0067] tRNALeu-F: 5'-CGAAATCGGTAGACGCTACG-3'
[0068] tRNALeu-R: 5'-TTCCATTGAGTCTCTGCACCT-3'
[0069] tRNALeu Probe: 5'-FAM-GCAATCCTGAGCCAAATCC-TAMRA-3'
[0070] Such as figure 1 It shows that the DNA of the samples of the experimental ...
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