Primer probe composition, kit and detection method for detecting 7 kinds of hotspot mutations in human kras gene
A primer-probe and composition technology, applied in the field of molecular biology, can solve the problems of low cost, inaccurate results, low sensitivity and the like
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Embodiment 1
[0074] 1. According to the wild-type gene sequence of codons 12 and 13 of exon 2 of KRAS gene and 7 kinds of mutant gene sequences published by Cosmic data, design ARMS primers, general downstream primers, specific probes, quality control primers and quality control primers. Control probe, designed primers and probes can be artificially synthesized according to existing methods.
[0075] Specifically, the primers and probes are as follows:
[0076]
[0077] Among them, ARMS primer 1 and universal downstream primer, ARMS primer 2 and universal downstream primer, ARMS primer 3 and universal downstream primer, ARMS primer 4 and universal downstream primer, ARMS primer 5 and universal downstream primer, ARMS primer 6 and universal downstream primer, ARMS primer 7 and universal downstream primers consist of 7 pairs of specific primers, which can amplify 7 hotspot mutations of KRAS gene respectively.
[0078] 2. In addition, it also includes the internal control primers and internal contr...
Embodiment 2
[0085] Using the kit of Example 1 of the present invention to detect KRAS gene mutations includes the following steps:
[0086] (1) Sample processing and template extraction to be tested;
[0087] Take fresh frozen or paraffin-embedded human tumor tissue, extract DNA with extraction kit, and quantitatively dilute it to 5ng / μL as a template for PCR detection.
[0088] (2) Using the kit of the present invention, take 1 quality control tube and 7 mutation detection tubes, and add the sample DNA template, PCR mixed reaction solution, specific probes and internal control primers to the 7 mutation detection tubes respectively. Probe, each mutation detection tube is also added with a pair of specific primers composed of corresponding ARMS primers and universal downstream primers; 1 quality control tube is added with the DNA template of the test sample, PCR mixed reaction solution, and 1 pair of quality control tubes. Control primers and quality control probes for ARMS-qPCR detection of KRA...
Embodiment 3
[0111] Example 3 Practical application of the detection method
[0112] The kit and detection method of the present invention are used to detect whether there are mutations in codons 12 and 13 of exon 2 of KRAS gene in tumor patients, and the method is as follows:
[0113] 1. Sample acquisition and template extraction
[0114] 63 patients with non-small cell lung cancer and colorectal cancer were selected, and paraffin-embedded tissue sections from lungs of patients with non-small cell lung cancer and colorectal cancer were taken as test samples, using Qiagen’s QIAamp paraffin-embedded tissue The extraction kit (Cat No.56404) extracts DNA and quantitatively dilutes it to 5ng / μL as a template for PCR detection.
[0115] 2. Perform real-time fluorescence quantitative PCR amplification
[0116] The above-mentioned 63 samples were tested by PCR. The method was as follows: each sample DNA was tested with 7 mutation detection tubes and 1 quality control tube. The 7 mutation detection tubes w...
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