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Specific primer and identification method for microsatellite markers of sea horses in coastal waters of China

A technology of microsatellite marking and identification method, applied in the field of rare fishery resources investigation, can solve the problems of inaccurate identification, time-consuming and labor-intensive, etc., and achieves the effects of high reliability, simple operation and strong practicability

Active Publication Date: 2015-04-22
SOUTH CHINA SEA INST OF OCEANOLOGY - CHINESE ACAD OF SCI
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Problems solved by technology

The traditional method is based on hippocampal morphological data. However, this method is time-consuming and laborious. What's worse, when the hippocampus is small or may be damaged during the collection, processing, identification and storage of hippocampal specimens, it cannot Morphologically accurate identification

Method used

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  • Specific primer and identification method for microsatellite markers of sea horses in coastal waters of China
  • Specific primer and identification method for microsatellite markers of sea horses in coastal waters of China
  • Specific primer and identification method for microsatellite markers of sea horses in coastal waters of China

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Embodiment 1

[0073] 1. Develop multiple hippocampal microsatellite markers

[0074] The present invention randomly selects partial sequences from the genome database of three-spot hippocampus and tiger-tailed hippocampus to screen for microsatellite markers, and then uses SSR Hunter 1.3 software (http: / / www.bio-soft.net / dna / ) to search for genomic DNA The microsatellite position of the sequence, according to the number of three base repeats> 5, four> 4. Number of repeats of five and six bases> Screening was carried out according to 3 criteria, and finally the sequences of 10 microsatellite loci were screened, of which 5 sequences were from the three-spot hippocampus and 5 were from the tiger-tail hippocampus. Then use Primer3 software to design specific primers for Chinese offshore hippocampal microsatellite markers. The design principles are as follows: The G / C content of the upstream and downstream primer sequences is generally 40%-60%; the Tm value is between 50-60℃; try to avoid primers. ...

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Abstract

The invention discloses a specific primer and an identification method for microsatellite markers of sea horses in coastal waters of China. The identification method comprises the following steps: firstly developing a plurality of sea horse microsatellite markers (SSR); then extracting a sea horse sample DNA; then carrying out PCR amplification on the sea horse microsatellite markers and positive control (a COI gene); carrying out agarose gel electrophoresis on a PCR product; and identifying according to strip type of a plurality of product strips. The identification method disclosed by the invention is not limited by morphological characteristics of the sea horse sample. Regardless of size, freshness or death, deformation and incompleteness of the sample, species identification of sea horses in coastal waters of China can be accomplished by a small amount of DNA, so that the identification method is strong in practicability. The identification method is clear in result, intuitive and clear, strong in repeatability and high in reliability, can be used for detecting a plurality of sea horses or types of sea horses at the same time, and is simple and convenient and efficient and convenient to operate, thereby providing a powerful tool for researches on biological resource survey, germplasm protection, ecoethology and the like on the sea horses in coastal waters of China.

Description

Technical field: [0001] The invention belongs to the field of investigation of rare fishery resources, and in particular relates to a specific primer and an identification method for the microsatellite marker of the Chinese offshore hippocampus. Background technique: [0002] Hippocampus, belonging to Syngthidae (Syngthidae) and Hippocampus (Hippocampus), is a type of bony fish. It is a precious marine Chinese medicinal material. It is known as the "Southern Ginseng" in my country. It has the effects of pain, calming and soothing, but also has high ornamental value and the function of collecting decorations. The international trade volume of seahorses is also increasing year by year. In 2009, my country imported 40 million dried seahorses, accounting for 2 / 3 of the international seahorse market, and paid more than 500 million US dollars in foreign exchange. In the past few decades, due to long-term overfishing, environmental pollution, climate change and other factors, my country...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6858C12Q1/6888C12Q2600/156C12Q2535/131
Inventor 罗伟林强屈宏越王信
Owner SOUTH CHINA SEA INST OF OCEANOLOGY - CHINESE ACAD OF SCI
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