Fluorescent genotyping detection kit and detection method for eight K-ras gene mutations
A technology for detecting kits and genes, applied in the fields of biotechnology and clinical molecular diagnosis, can solve the problems of expensive kits and a large number of tumor samples, and achieve the effects of reducing the number of reaction tubes, good specificity and high sensitivity
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Embodiment 1
[0045] Example 1: Extraction of Genomic DNA
[0046] The paraffin-embedded tissue sections of patients with colorectal cancer (CRC) diagnosed clinically and pathologically were collected, the genomic DNA of the samples was extracted with Qiagen’s REPLI-g FFPE Kit kit, and the concentration and purity of the extracted nucleic acid were detected with a NanoDrop 1000 nucleic acid and protein analyzer .
Embodiment 2
[0047] Embodiment 2: the design of primer, probe
[0048] Design and screen specific MGB probes, ARMS primers, universal primers, internal reference primers and probes that can specifically detect 8 mutations of K-ras gene. The 8 mutations of K-ras gene are: codon 12 GGT > GAT, 12 GGT > AGT, 12 GGT > GTT, 12 GGT > GCT, 12 GGT > TGT, 12 GGT > CGT, 13 GGC > GAC and 13 GGC > Substitution mutations in CGC. Allele-specific MGB probe sequences such as SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO: 7. Shown in SEQ ID NO: 8; The sequence of the universal upstream primer is shown in SEQ ID NO: 9; The sequence of the ARMS downstream primer is shown in SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13. Shown in SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, and SEQ ID NO: 17; the sequence of the wild-type internal reference probe is shown in SEQ ID NO: 18; the sequence of the wild-type internal reference primer is shown in SEQ ID NO: 18 ...
Embodiment 3
[0049] Embodiment 3: the optimization of reaction system
[0050] (1) Optimization of primer concentration: Under the same conditions in the reaction system, the primer concentration was serially diluted from 200 nM to 800 nM, and the optimal primer concentration was determined to be 600 nM by analyzing and comparing the test results. .
[0051] (2) Optimization of probe concentration: under the same conditions in the reaction system, the probe concentration was serially diluted from 100 nM to 300 nM, and the optimal probe concentration was determined by analyzing and comparing the test results. is 200 nM.
[0052] (3) Optimization of MgCl2 concentration: Under the same conditions in the reaction system, the MgCl2 concentration was serially diluted from 2 mM to 5 mM, and the optimal MgCl2 concentration was determined to be 3 mM by analyzing and comparing the test results.
[0053](4) Optimization of Taq DNA polymerase: Various enzymes were added to the reaction system, and t...
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