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Fluorescent genotyping detection kit and detection method for eight K-ras gene mutations

A technology for detecting kits and genes, applied in the fields of biotechnology and clinical molecular diagnosis, can solve the problems of expensive kits and a large number of tumor samples, and achieve the effects of reducing the number of reaction tubes, good specificity and high sensitivity

Inactive Publication Date: 2014-04-02
SHANGHAI XINGYAO MED TECH DEV CO LTD +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the domestic Xiamen Aide Biomedical Technology Co., Ltd. has developed the ADx-ARMS patented technology with independent intellectual property rights on the basis of ARMS technology, and successfully developed the corresponding kit for K-ras gene mutation detection, but the company The kit is expensive, and the detection of 7 mutations needs to be detected in 7 tubes, requiring a large amount of tumor samples

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0045] Example 1: Extraction of Genomic DNA

[0046] The paraffin-embedded tissue sections of patients with colorectal cancer (CRC) diagnosed clinically and pathologically were collected, the genomic DNA of the samples was extracted with Qiagen’s REPLI-g FFPE Kit kit, and the concentration and purity of the extracted nucleic acid were detected with a NanoDrop 1000 nucleic acid and protein analyzer .

Embodiment 2

[0047] Embodiment 2: the design of primer, probe

[0048] Design and screen specific MGB probes, ARMS primers, universal primers, internal reference primers and probes that can specifically detect 8 mutations of K-ras gene. The 8 mutations of K-ras gene are: codon 12 GGT > GAT, 12 GGT > AGT, 12 GGT > GTT, 12 GGT > GCT, 12 GGT > TGT, 12 GGT > CGT, 13 GGC > GAC and 13 GGC > Substitution mutations in CGC. Allele-specific MGB probe sequences such as SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO: 7. Shown in SEQ ID NO: 8; The sequence of the universal upstream primer is shown in SEQ ID NO: 9; The sequence of the ARMS downstream primer is shown in SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13. Shown in SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, and SEQ ID NO: 17; the sequence of the wild-type internal reference probe is shown in SEQ ID NO: 18; the sequence of the wild-type internal reference primer is shown in SEQ ID NO: 18 ...

Embodiment 3

[0049] Embodiment 3: the optimization of reaction system

[0050] (1) Optimization of primer concentration: Under the same conditions in the reaction system, the primer concentration was serially diluted from 200 nM to 800 nM, and the optimal primer concentration was determined to be 600 nM by analyzing and comparing the test results. .

[0051] (2) Optimization of probe concentration: under the same conditions in the reaction system, the probe concentration was serially diluted from 100 nM to 300 nM, and the optimal probe concentration was determined by analyzing and comparing the test results. is 200 nM.

[0052] (3) Optimization of MgCl2 concentration: Under the same conditions in the reaction system, the MgCl2 concentration was serially diluted from 2 mM to 5 mM, and the optimal MgCl2 concentration was determined to be 3 mM by analyzing and comparing the test results.

[0053](4) Optimization of Taq DNA polymerase: Various enzymes were added to the reaction system, and t...

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Abstract

The invention belongs to the field of biotechnology and clinical molecular diagnosis and in particular relates to a fluorescent genotyping detection kit and a detection method for eight human K-ras gene mutations. According to the method, an MGB (minor groove binder) probe technology is combined with a mismatch ARMS (amplification refractory mutation system) technology, an MGB probe complementary with a DNA (deoxyribonucleic acid) plus strand and an ARMS downstream primer complementary with a DNA minus strand are designed at allelic gene loci, a mismatch locus is introduced in the ARMS downstream primer, the MGB probe is overlapped with the ARMS primer by not more than 5 bp, and the eight human K-ras gene mutations are subjected to genotyping detection by four reaction pipes based on multiple fluorescent PCR (polymerase chain reaction). The method has the advantages of good specificity, high sensitivity, simplicity and quickness for operation, accuracy for genotyping, simplicity for result interpretation and the like, and can be used for detecting the clinical K-ras gene mutations and helping doctors screen the crowed with effective anti-EGFR (epidermal growth factor receptor) treatment.

Description

technical field [0001] The invention belongs to the fields of biotechnology and clinical molecular diagnosis, and in particular relates to a detection kit and a detection method for eight mutations of human K-ras gene. Background technique [0002] K-ras gene is one of the RAS gene family, located on human chromosome 12, is a proto-oncogene, which has a great impact on human cancer. The K-ras gene encodes a ras protein with a molecular weight of 21kD, also known as p21 protein. The p21 protein is located on the inner surface of the cell membrane, has GTPase activity, and participates in intracellular signal transduction. It is active when combined with GTP, and inactive when combined with GDP. . The K-ras gene is like a molecular switch in the body. It plays an important regulatory role in the signal transduction pathway of tumor cell growth and angiogenesis. The normal K-ras gene can inhibit the growth of tumor cells, but it will induce The gene is permanently activated, ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68
CPCC12Q1/6858
Inventor 吴舒歌吴大治夏懿
Owner SHANGHAI XINGYAO MED TECH DEV CO LTD
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