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Information processing device, information processing method, and program

An information processing device and sequence comparison technology, applied in informatics, bioinformatics, electronic digital data processing, etc., can solve problems such as deletion, mutation and duplication, and chromosome rearrangement

Inactive Publication Date: 2011-12-14
SONY CORP
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

This is because insertion of a foreign gene into an unstable region may result in chromosomal rearrangements such as deletions, mutations, and duplications

Method used

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  • Information processing device, information processing method, and program
  • Information processing device, information processing method, and program
  • Information processing device, information processing method, and program

Examples

Experimental program
Comparison scheme
Effect test

no. 1 approach

[0050] (2-1) Configuration of information processing device

[0051] (2-2) Flow chart of analysis method for homologous domain phylogeny

[0052] (2-3) Flow chart of analysis method for homology domain function

[0053] (2-4) An example of software for analyzing genome structure

[0054] (2-5) The first modified example

[0055] (3) Hardware configuration of the information processing device according to the embodiment of the present invention

[0056] (4) Application example

[0057] (5) Summary

[0058] (homologous recombination)

[0059] Before describing the information processing device and the phylogenetic analysis method according to the embodiment of the present invention, reference will be made to figure 1 Briefly explain the phenomenon of homologous recombination. figure 1 is a diagram for explaining homologous recombination.

[0060] Such as figure 1 As shown, as a molecular mechanism related to the rearrangement of chromosome groups, there is a phenomenon ...

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PUM

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Abstract

Provided are an information processing device, an information processing method, and a program. An information processing apparatus according to the present invention, comprising: a data acquisition unit that acquires string data representing a string of one or more characters; and a phylogenetic analysis unit that analyzes the string data acquired by the data acquisition unit to determine the string data represented by the string data. Extract homologous string fragments, and perform phylogenetic analysis based on the positional relationship and homologous relationship of the extracted homologous string fragments.

Description

technical field [0001] The present invention relates to an information processing device, an information processing method, and a program. Background technique [0002] In genetic engineering with the insertion of a foreign gene, in order to maintain host function, suppression of the operon (multiple contiguous gene clusters transcriptionally controlled by a pair of promoter and terminator) located around the insertion site of the foreign gene should be avoided. control. Therefore, promoter regions, enhancer regions and terminator regions must be identified. Software and servers for extracting and analyzing these elements are available. These regions can be identified based on data from local sequences surrounding candidate insertion locations. [0003] In addition to the identification of the above regions, it was previously necessary to examine unstable regions on the genome that carry genetic information in cells, ie regions where genomic rearrangements may occur. Thi...

Claims

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Application Information

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IPC IPC(8): G06F19/14G16B10/00G16B30/10
CPCG06F19/14G06F19/26G06F19/22G16B10/00G16B30/00G16B45/00G16B30/10
Inventor 吉田芳
Owner SONY CORP
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