Oligonucleotide primer for detecting common pathogenic bacteria by adopting fluorescent quantitation PCR (Rich Client Platform) technology, method thereof for detecting common pathogenic bacteria and application thereof
An oligonucleotide and fluorescent quantitative technology, which is applied in the fields of biochemical equipment and methods, recombinant DNA technology, microbial measurement/testing, etc. Infection and other problems, to achieve the effect of high-efficiency application range
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Embodiment 1
[0080] Example 1 Taking the simultaneous detection of Salmonella and Listeria monocytogenes in water as an example
[0081] 1. Carry out the design of Salmonella and Listeria monocytogenes specific oligonucleotide primers: primer design is a crucial part in the PCR technology, especially in the multiple pathogen detection method and application of the present invention In the system, it is the most important factor in the whole system; the steps of specific oligonucleotide primer design are as follows:
[0082] ⑴Log in to GenBank (http: / / ncbi.nlm.nih.gov / entrez), search for the target gene fimA sequence of Salmonella and the target gene hly sequence of Listeria monocytogenes in the nucleic acid database, and screen out after checking one by one Sequences with good sequencing quality;
[0083] (2) Use Primer Premier 5.0 software to design specific oligonucleotide primers for the target gene sequence;
[0084] (3) Submit the designed candidate sequences to GenBanK for BLAST co...
Embodiment 2
[0095] Example 2 Taking the simultaneous detection of Shigella and Campylobacter jejuni in food as an example
[0096] Ⅰ. Design Shigella and Campylobacter jejuni-specific oligonucleotide primers: the steps of oligonucleotide primer design are as follows:
[0097] (1) Log in to GenBank (http: / / ncbi.nlm.nih.gov / entrez), search for the ipaH sequence of the target gene of Shigella and the htp sequence of the target gene of Campylobacter jejuni in the nucleic acid database, and check the sequencing quality one by one better sequence;
[0098] (2) Use Primer Premier 5.0 software to design specific primers for the target gene sequence;
[0099] (3) Submit the designed candidate sequences to GenBanK for BLAST comparison, and select the one with the best specificity for synthesis. The primers for Shigella are Sf-ipa-1 (5'- CCGGGATAAAGTCAGAACTC-3') and Sf-ipa -2(5'-CTCCCGACACGCCATAGAAA-3'), the length of the PCR product of this pair of primers is 131bp; the primers of C. '- AGGCACGCCT...
Embodiment 3
[0110] Example 3 Taking the simultaneous detection of Enterobacter sakazakii and enterohaemorrhagic Escherichia coli O157 in feces as an example
[0111] Ⅰ. Design of specific primers for Enterobacter sakazakii and E. coli O157: The steps of primer design are as follows:
[0112] ⑴Log in to GenBank (http: / / ncbi.nlm.nih.gov / entrez), search the target gene ompA sequence of Enterobacter sakazakii and the target gene eae sequence of enterohaemorrhagic Escherichia coli O157 in the nucleic acid database, check and screen Generate sequences with better sequencing quality;
[0113] (2) Use Primer Premier 5.0 software to design specific primers for the target gene sequence;
[0114] (3) Submit the designed candidate sequences to GenBank for BLAST comparison, and select the one with the best specificity for synthesis. The primers for Enterobacter sakazakii are Es-ompA-1 (5'- GCTGAGCGTAGGTGTTTCCT-3') and Es-ompA -2 (5'-CAGGGTGAAGTGCTTGGTCT-3' ), the PCR product of this pair of primers ...
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