Primer group for LAMP (loop-mediated isothermal amplification) detection of novel 2019 coronavirus, dual constant-temperature chromogenic kit and detection method

A coronavirus and primer set technology, applied in the biological field, can solve the problems of reagent shortage, cumbersome operation, and inability to popularize, and achieve the effects of enhanced specificity and sensitivity assurance, mature and stable technology, and low testing cost

Pending Publication Date: 2021-09-28
TIANJIN NORMAL UNIVERSITY
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0002] There are some defects in the existing 2019 coronavirus detection reagents, such as PCR technology is simple and fast, high sensitivity, but the workload is heavy, the operation is cumbersome, and the throughput is low; the throughput of the gene chip is high, but it is also easy to cause false positives and is expensive; real-time fluorescence Quantitative PCR technology has high sensitivity and good reliability, and it is a fully closed reaction. However, this technology requires expensive fluorescent quantitative PCR instruments, which cannot be popularized in grassroots detection departments and epidemic prevention institutions, and fluorescently labeled probes are required to ensure high specificity. higher cost
In short, these nucleic acid detection technologies have a series of shortcomings such as relying on expensive instruments, high detection costs, and laboratory limitations; moreover, these molecular biology detections have high requirements for quality control, operating environment and professional ability of personnel, and cannot Achieving popularization and application at the grassroots level cannot meet the needs of rapid virus detection during the epidemic
The operation of constant temperature chromogenic amplification is simple, convenient and does not require highly skilled staff to operate. However, due to the difficulty in designing primers, false negatives or false positives are prone to occur, resulting in a shortage of reagents for constant temperature chromogenic amplification.
[0003] At present, the quality of nucleic acid detection kits is uneven, and the stability and reliability of nucleic acid detection are still doubtful; the detection rate of nucleic acid is low, and many medical records need to be tested 2-3 times; Virus; the number of people waiting for nucleic acid testing greatly exceeds the testing capacity, and the test results obtained in a hurry are not reliable

Method used

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  • Primer group for LAMP (loop-mediated isothermal amplification) detection of novel 2019 coronavirus, dual constant-temperature chromogenic kit and detection method
  • Primer group for LAMP (loop-mediated isothermal amplification) detection of novel 2019 coronavirus, dual constant-temperature chromogenic kit and detection method
  • Primer group for LAMP (loop-mediated isothermal amplification) detection of novel 2019 coronavirus, dual constant-temperature chromogenic kit and detection method

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0027] Example 1 Screening of Primer Sets for Double Constant Temperature Chromogenic Amplification of N Gene

[0028] 1.1 Sequence alignment of specific amplified gene fragments

[0029] 1.1.1 Intraspecies conservative comparison

[0030] The new coronavirus is a single-stranded positive-strand RNA virus with an envelope and a genome length of about 30Kb. Four structural proteins play an important role in virion assembly. The S gene, which encodes the spike glycoprotein, is the protein used to coat the virus. M gene, which encodes membrane glycoprotein, is responsible for the transmembrane transport of nutrients, budding and release of nascent viruses, and the formation of viral outer envelopes. The E gene is a very short coding 75 amino acid small envelope glycoprotein, which can bind to the envelope. The N gene, which encodes the nucleocapsid protein, a structural protein involved in virion assembly, plays a key role in viral transcription and assembly efficiency.

[0...

Embodiment 2

[0063] The optimization of embodiment 2 S gene constant temperature chromogenic amplification detection system

[0064] 2.1 Establishment of constant temperature chromogenic amplification reaction system

[0065] Use 10 5 U / L Bst enzyme, 4×10 6 U / L AMV enzyme, 8×10 5 U / L RNasin, 200mM dNTPs, 10mM Tris-HCl (pH=8.3), 20mM KCl, 3.5mM MgCl 2 Prepare a premixed reaction solution for constant temperature chromogenic amplification, use the detection primers for the novel coronavirus N gene confirmed in Example 1 to prepare a double constant temperature chromogenic amplification detection reaction system for the novel coronavirus N gene, mix it and place it in a thermostat Isothermal chromogenic amplification was carried out.

[0066] The reaction conditions are:

[0067] Constant temperature water bath: react at 63°C for 30 minutes.

[0068] Or isothermal amplification instrument: react at 63°C for 30 minutes.

[0069] 2.2 The establishment and optimization results of the cons...

Embodiment 3

[0074] Example 3 Sensitivity Verification of N Gene Double Constant Temperature Chromogenic Amplification Screening Detection Method

[0075] Dilute the N protein gene in vitro transcription RNA plasmid positive control sample with a 10-fold difference, and the gradient concentrations are 1ng / μL, 100pg / μL, 10pg / μL, 1pg / μL, 100fg / μL, 10fg / μL, 1fg / μL , detected by the constant temperature chromogenic amplification reaction system in Example 2, the results showed that within 45 minutes, two parallels of 10 fg were stably detected, and only one of the two parallels of 1 fg was detected, and the detection limit was 10 fg.

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Abstract

The invention provides a primer group for LAMP (loop-mediated isothermal amplification) detection of novel 2019 coronavirus, a dual constant-temperature chromogenic kit and a detection method. The dual constant-temperature chromogenic kit comprises an outer primer pair 1, an outer primer pair 2, an inner primer pair 1, an inner primer pair 2, a loop primer pair 1 and a loop primer pair 2. The 2019 novel coronavirus double constant-temperature chromogenic screening detection kit provided by the invention has the advantages of mature and stable technology, low test cost and more suitability for primary popularization, is more suitable for rapid screening detection of primary laboratories such as community laboratories, enterprise laboratories and county health institutes, has good market competitiveness, and has good industrialization prospects.

Description

technical field [0001] The invention belongs to the field of biotechnology, and in particular relates to a primer set for 2019 novel coronavirus LAMP detection, a dual constant temperature chromogenic kit and a detection method. Background technique [0002] There are some defects in the existing 2019 coronavirus detection reagents, such as PCR technology is simple and fast, high sensitivity, but heavy workload, cumbersome operation, low throughput; gene chip high throughput, but also easy to cause false positives, expensive; real-time fluorescence Quantitative PCR technology has high sensitivity, good reliability, and is a fully closed reaction. However, this technology requires expensive fluorescent quantitative PCR instruments, which cannot be popularized in grass-roots inspection departments and epidemic prevention institutions, and fluorescently labeled probes are required to ensure high specificity. higher cost. In short, these nucleic acid detection technologies have...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/6844C12N15/11C12R1/93
CPCC12Q1/701C12Q1/6844C12Q2521/101C12Q2521/107C12Q2531/119
Inventor 郑文杰季超薛淑霞孙金生张芹刘文彬闫春财
Owner TIANJIN NORMAL UNIVERSITY
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