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Swine-derived reference gene and application thereof in internal control nucleic acid test strip

A nucleic acid test strip and internal reference gene technology, applied in the field of molecular biology, can solve the problems of false negatives between batches, and achieve the effects of improving specificity, convenient detection and short time.

Pending Publication Date: 2021-02-05
天津市农业科学院
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, false negatives are different. It involves the entire detection process, whether the experimental equipment is calibrated, whether the reagents are good or bad, and the differences between batches, the skill of the operator, and the amplification inhibitors in the sample will all cause false negative results.

Method used

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  • Swine-derived reference gene and application thereof in internal control nucleic acid test strip
  • Swine-derived reference gene and application thereof in internal control nucleic acid test strip
  • Swine-derived reference gene and application thereof in internal control nucleic acid test strip

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0040] Internal reference gene PCR stability test

[0041] 1 Materials and methods

[0042] 1.1 Samples Organ samples from a pig, including heart, liver, lung, spleen, kidney, intestine

[0043] 1.2 Sample processing and nucleic acid extraction: Use sterile scissors to cut about 1 g of diseased material sample, add 5 mL of PBS, after homogenization, freeze and thaw 3 times, centrifuge at 10,000 rpm for 5 min, and use the supernatant for nucleic acid extraction. The nucleic acid extraction method was carried out according to the instructions of the nucleic acid extraction kit.

[0044] 1.3 Main Reagents

[0045]rTaq DNA polymerase, dNTP, and 10XPCR buffer were purchased from Dalian Bao Biological Engineering Co., Ltd.; nucleic acid extraction kits were purchased from Jinrui Hongjie Biotechnology Co., Ltd.

[0046] 1.3 Amplification reaction system: the total volume of the amplification reaction is 20 μL, and its various components and final concentrations are: 10×PCR buffer ...

Embodiment 2

[0054] Internal reference gene used as internal control nucleic acid for detection of porcine pseudorabies

[0055] 1 Materials and methods

[0056] 1.1 Main reagents

[0057] rTaq DNA polymerase, dNTP, and 2XGCbuffer I were purchased from Dalian Bao Biological Engineering Co., Ltd.; nucleic acid extraction kits were purchased from Jinrui Hongjie Biotechnology Co., Ltd.; PRV detection primers (PRV-F and PRV-R, where PRV-R labeled FITC ); PRV probe (Prv-T labeled Bio).

[0058] 1.2 Sample processing and nucleic acid extraction: Use sterile scissors to cut about 1 g of diseased material sample, add 5 mL of PBS, after homogenization, freeze and thaw 3 times, centrifuge at 10,000 rpm for 5 min, and use the supernatant for nucleic acid extraction. The nucleic acid extraction method was carried out according to the instructions of the nucleic acid extraction kit.

[0059] 1.3 Amplification reaction system: the total volume of the amplification reaction is 30 μL, and its various c...

Embodiment 3

[0067] Gene as internal control nucleic acid for detection of porcine circovirus type 2

[0068] 1 Materials and methods

[0069] 1.1 Main reagents

[0070] rTaq DNA polymerase, dNTP, and 2XGCbuffer I were purchased from Dalian Bao Biological Engineering Co., Ltd.; nucleic acid extraction kits were purchased from Jinrui Hongjie Biotechnology Co., Ltd.

[0071] 1.2 Sample processing and nucleic acid extraction: Use sterile scissors to cut about 1 g of diseased material sample, add 5 mL of PBS, after homogenization, freeze and thaw 3 times, centrifuge at 10,000 rpm for 5 min, and use the supernatant for nucleic acid extraction. The nucleic acid extraction method was carried out according to the instructions of the nucleic acid extraction kit.

[0072] 1.3 Main Reagents

[0073] rTaq DNA polymerase, dNTP, 10XPCR buffer, and DL2000 DNA Marker were purchased from Dalian Bao Biological Engineering Co., Ltd.; nucleic acid extraction kits were purchased from Jinrui Hongjie Biotechn...

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PUM

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Abstract

The invention discloses a reference gene primer and a probe for detecting a swine-derived sample. The reference gene primer and probe respectively have nucleic acid sequences shown in SEQ ID NO:1-3. The reference gene primer can meet requirement of internal control nucleic acid detection when a swine-derived sample is detected, and avoid false negative results. The invention also discloses an application of the primer in an internal control nucleic acid test strip, and specific steps are as follows: designing a primer and a probe for pathogenic conservative genes, taking extracted sample DNA as a template, carrying out PCR amplification on the pathogenic detection primer and the reference primer at the same time, adding the reference probe and the pathogenic probe after the reaction is finished, detecting the PCR product of the sample to be detected by using the internal control nucleic acid test strip, and reading detection results. The invention can better meet requirements of fielddetection, and can be used for on-site detection of import and export quarantine, primary veterinary laboratories, livestock farms and the like.

Description

technical field [0001] The invention belongs to the field of molecular biology, and relates to a pig-derived internal reference gene and the application of the internal control nucleic acid test strip. Background technique [0002] Molecular biology detection methods are widely used in the detection of diseases due to their fast detection, high sensitivity, and good specificity. False positives and false negatives are potential problems that plague molecular biology testing, and false negatives are more serious than false positives in clinical testing. This is because the cause of false positives is mostly the contamination of amplification products, which can be solved by adding UNG enzyme and nucleic acid removal reagents, and sub-regional detection. However, false negatives are different. It involves the entire detection process, whether the experimental equipment is calibrated, whether the reagents are good or bad, and the differences between batches, the skill of the o...

Claims

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/6804C12N15/11C12R1/93
CPCC12Q1/701C12Q1/6804C12Q2600/166C12Q2531/113C12Q2545/101C12Q2563/107C12Q2563/131C12Q2565/625
Inventor 张莉鄢明华李秀丽路超任卫科王利丽池晶晶田向学李富强董志民江珊李程
Owner 天津市农业科学院
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