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Clostridium welchii specific detection primer and detection kit

A technology of Clostridium welchii disease and Clostridium welchii, which is applied to biochemical equipment and methods, measurement/inspection of microorganisms, microorganisms, etc., can solve the problems of low detection rate, cumbersome steps, long cycle, etc., and achieve PCR Appropriate reaction conditions, sensitive PCR detection, and objective result judgment

Inactive Publication Date: 2019-01-04
SOUTH CHINA AGRI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0003] For a long time, the most classic and accurate method to detect Clostridium welchii is the toxin neutralization test, but it has the disadvantage of misjudgment caused by non-specific death, and it is time-consuming and laborious, and the test period is long
At present, most of the identification of bacteria still use traditional bacteriological methods and animal experiments, but there are disadvantages such as cumbersome steps, long cycle, low detection rate, and the accuracy of the experimental results cannot be guaranteed.
Other diagnostic methods, such as ELISA detection method, are mainly used for serotype typing, and are rarely used in laboratory diagnosis and clinical diagnosis; although the detection of antitoxin has good sensitivity and specificity, the process of preparing antitoxin is very cumbersome. And it needs to be purified to detect the toxin antigen, and it is prone to non-specific reactions, so this method is not commonly used; the reported detection method is basically based on the α-toxin gene, but other bacteria, such as Clostridium putrefaction, also have α -The toxin gene may also be amplified, which will affect the detection results, so the use of α-toxin gene-specific PCR has limitations
[0004] In summary, although these identification methods are still used in the diagnosis of Clostridioides welchiisis so far, there is an urgent need for more accurate, rapid and easy-to-operate detection methods in clinical practice.

Method used

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  • Clostridium welchii specific detection primer and detection kit
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  • Clostridium welchii specific detection primer and detection kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0049] Example 1 Primer Design and Screening

[0050] 1. Experimental steps

[0051] (1) According to the entire gene sequence encoding Clostridium welchii 16s rRNA, compare it with the 16s rRNA gene sequences of other bacteria, select specific genes as target genes for the diagnosis of Clostridioides welchii disease, and design specific primers according to their gene sequences, See Table 1.

[0052] Table 1 Clostridium welchii specific PCR primers

[0053]

[0054] (2) Extraction of fecal DNA: extraction was performed using a commercially available kit, and the specific steps were referred to the instructions of QIAamp Company.

[0055](3) The PCR reaction system is: Premix Ex Taq Version 2.0 (Loading dye Mix) 12.5 μL, forward primer and reverse primer 0.5 μL each, double distilled water 9.5 μL, template DNA 2 μL, the number of amplified samples n (n = number of samples + 3). Mix the above reaction solution in a centrifuge tube, mix well, and pack. Take the DNA of ea...

Embodiment 2

[0064] The optimization of embodiment 2 PCR reaction conditions

[0065] 1. Experimental steps

[0066] Use the primer TTF-2 / TTR-2 (the nucleotide series shown in SEQ ID NO: 1-2) screened in Example 1 to perform PCR amplification. The PCR reaction system is the same as in Example 1, and the annealing temperature is 44.3°C to 55.3° C., and the number of cycles is adjusted between 25 and 45. Refer to Example 1 for specific operations and determination methods.

[0067] 2. Experimental results

[0068] The results showed that the optimal annealing temperature for PCR using TTF-2 / TTR-2 (its nucleotide series as shown in SEQ ID NO: 1-2) as a primer was 52.3°C ( figure 2 ); the number of cycles is 25. Among them, "1~12" represent the annealing temperature of 44.3°C, 45.3°C, 46.3°C, 47.3°C, 48.3°C, 49.3°C, 50.3°C, 51.3°C, 52.3°C, 53.3°C, 54.3°C, 55.3°C, "13" represents a blank control.

Embodiment 3

[0069] Embodiment 3 a kind of clostridial disease detection kit

[0070] 1. Kit composition

[0071] The composition of the kit in this embodiment includes: primer TTF-2 / TTR-2 (the nucleotide series of which is shown in SEQ ID NO: 1-2), sample DNA extract, PCR reaction reagent and positive control.

[0072] Among them, the sample DNA extraction solution is an independently packaged fecal DNA extraction solution, and the specific composition is: 140 mL of ASL Buffer, 1.4 mL of proteinase K, 33 mL of Buffer AL, 19 mL of Buffer AW1, and 13 mL of Buffer AW2, 12 mL of Buffer AE, 10 mL of 96%-100% alcohol.

[0073] The PCR reaction reagents are: 500 μL Premix Ex Taq Version 2.0 (Loading dyeMix) for 40 reactions.

[0074] Primer TTF-2 / TTR-2: its nucleotide sequence is shown in SEQ ID NO: 1-2, and its concentration is 50 pmol / μL.

[0075] The positive control is Clostridium welchii genomic DNA, and its function is to compare PCR products and monitor whether the PCR operation proces...

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Abstract

The invention discloses a clostridium welchii specific detection primer group and a detection kit. Nucleotide sequences of the specific detection primer group are shown as SEQ ID NO:1 and SEQ ID NO:2respectively, the primer group is adopted for preparing a clostridium welchii specific detection kit, and a novel PCR (polymerase chain reaction) detection method for clostridium welchii is created. By design of special detection primers according to clostridium welchii specific sequences, the quick, specific and sensitive PCR detection method for clostridium welchii epidemiological investigationand clinical infection conditions is created, and accurate detection of clostridium welchii can be realized. The kit is simple and procedural in operation, the method is high in specificity, high sensitivity and objectiveness in result determination are achieved, epidemiological investigation of clostridium welchii, inapparent infection detection and clinical diagonisis can be realized, a promising application prospect and worthiness of large-scale popularization are achieved, and a foundation is laid for further research of clostridium welchii diagnosis, prevention and treatment techniques and the like.

Description

technical field [0001] The invention relates to the technical field of preparation of disease detection reagents, in particular to specific detection primers and a detection kit for Clostridioides welchiiosis. Background technique [0002] Clostridioides welchii is a zoonotic disease caused by Clostridium welchii. Clostridium welchii disease can cause enterotoxemia and necrotic enteritis in a variety of animals, which is closely related to the "sudden death syndrome" of livestock and poultry, and food infected with Clostridium welchii can cause food poisoning and gas gangrene in humans, causing public health security issues. Clostridium welchii disease has an acute onset, short course of disease, and rapid death. The infected animals usually die before diagnosis, which has caused great losses to the breeding industry. In addition, it is difficult to distinguish it from a variety of infectious diseases only through clinical diagnosis and pathological anatomy. Therefore, it...

Claims

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Application Information

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IPC IPC(8): C12Q1/689C12Q1/686C12Q1/04C12N15/11C12R1/145
CPCC12Q1/686C12Q1/689
Inventor 林瑞庆唐陶关青云林润山龙航宇翁亚彪
Owner SOUTH CHINA AGRI UNIV
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