Detection kit and method for Duchenne/Bell muscular dystrophy based on multiple PCR capture technology
A detection kit and detection method technology, applied in recombinant DNA technology, microbial determination/inspection, biochemical equipment and methods, etc., can solve the problems of low detection throughput, long detection period, low detection accuracy, etc. High detection sensitivity, low DNA sample quality requirements, and good accuracy
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Embodiment 1
[0047] Embodiment 1, DMD gene multiplex PCR capture primer set
[0048] The inventor designed multiple PCR capture primers for the target DNA sequences of the exons and introns of the DMD gene, specifically including: according to the reference sequence of the DMD gene in the UCSC database, 23 high-frequency known introns were retrieved from relevant literature and databases at the same time. Containing pathogenic mutations, the inventor selected 79 exons and 50bp intron sequences on both sides of the DMD gene and 23 sequences near the known intron pathogenic mutations, designed multiple PCR capture primers, and screened through a large number of experiments , optimization, verification, and finally selected 145 pairs of 290 primers (primer sequences are shown in SEQ ID NO: 1 ~ SEQ ID NO: 290, see Table 1 for details), which can maintain the amplification efficiency within a certain number of amplification cycles High consistency, in addition, the inventor also added 3 pairs o...
Embodiment 2
[0057] Embodiment 2, DMD gene mutation detection method
[0058] This embodiment provides a DMD gene mutation detection method based on the proton sequencing platform and multiple PCR capture technology. This embodiment takes 20 cases of DMD patients / carriers provided by the Neurology Laboratory of the First Affiliated Hospital of Sun Yat-sen University as an example for DMD For gene mutation detection, the above samples have been molecularly diagnosed by conventional methods and the pathogenic mutation information has been clarified.
[0059] 1. Synthesis of DMD gene PCR capture primers
[0060] According to the library construction requirements of the proton sequencing platform, the universal sequence was connected to the 5' end of the primers shown in SEQ ID NO: 1 to SEQ ID NO: 296 provided in Example 1. The primer pooling coefficients are shown in Table 1. The primers were provided by Thermo Fisher Corporation of the United States. synthesis.
[0061] Wherein, the nucleo...
Embodiment 3
[0087] Embodiment 3, DMD gene mutation information detection of low-quality, low-concentration DNA samples
[0088] Based on DMD gene multiplex PCR capture primer set of the present invention, because its specificity is good, sensitivity is high and highly consistent amplification efficiency, find through a large amount of experimental studies, for low quality (OD260 / 230<1.0) and low concentration (Qbit Template DNA with a concentration of <10ng / uL) can also be accurately detected. Taking 5 cases of low-quality and low-concentration DNA samples as examples, the test method is the same as that in Example 2.
[0089] Table 4 provides the basic situation and detection results of 5 samples. It can be seen that the DMD gene mutation detection method based on the DMD gene multiplex PCR capture primer set of the present invention has low detection limit, high accuracy, and low requirements for DNA sample quality.
[0090] Table 4. Low-quality DNA detection results
[0091]
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