Raa constant temperature fluorescence detection method and reagents of shrimp iridescent virus (siv)
A technology of iridescent virus and detection kit, which is applied in the field of molecular biology, can solve the problems of low sensitivity, complicated operation, and not suitable for early detection, etc., and achieve the effect of simple identification and simple operation
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Embodiment 1
[0029] The shrimp iridescent virus of the present invention searches the gene sequence of the shrimp iridescent virus strain in the Genebank database, uses DNAMAN 6.0 software to compare multiple sequences, and find out the conserved segments. Four sets of primers and probes were designed in the conserved regions, and BLAST comparison was performed in the NCBI database. The sequences of the primers and probes are shown in Table 1. The positive sample amplification curve is as follows figure 1 shown.
[0030] Table 1 primers and probe sequences:
[0031]
[0032] Depend on figure 1 The results show that the amplification curves of the fourth group of primers and probes are the most typical, with obvious exponential phase and plateau phase, higher fluorescence intensity (ordinate value), and smaller CT value (the intersection of the curve and the threshold line Corresponding abscissa) result analysis is shown in Table 2. For other primers and probes, the rising height of ...
example 3
[0053] Example 3: kit shrimp iridescent virus of the present invention
[0054] 1. Extraction of positive sample nucleic acid
[0055] 1.1. Nucleic acid extraction: DNA extraction was performed using a marine animal tissue DNA extraction kit.
[0056] 2. The configuration of the RAA reaction system: each test sample corresponds to a RAA reaction dry powder tube, and the reaction components and the added volume in each RAA reaction dry powder tube are shown in Table 3.
[0057] table 3:
[0058] RAA reaction system components Volume (μL) A Buffer 12.5μL B Buffer 2.5μL primer mix 4μL specific fluorescent probe 0.6μL DNA template 2μL wxya 2 o
28.4μL total capacity 50μL
[0059] A Buffer is 20% PEG; B Buffer is 280mM MgAc
[0060] 3. Place the RAA reaction tube with the reaction system in the ABI7500 amplification instrument, and carry out RAA amplification according to the following procedure: 39°C, 40s; 39°C...
Embodiment 4
[0063] Embodiment 4: Evaluation of the RAA detection kit of the present invention in clinical practice
[0064] The kit of the present invention is used to carry out a clinical blind sample experiment, and 500 copies of prawns are detected; the experimental results show that the fourth primer pair of the present invention can distinguish shrimp iridescent virus, and the positive coincidence rate with nested PCR is very high. Of the 500, nested PCR, 318 were positive and 182 were negative, 318 were positive by the RAA method, 181 were also negative, one was not tested probably due to contamination It was found that 182 were also negative results, and all of them could be matched one by one.
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