Application of HSDL1 to diagnosis and treatment of osteosarcoma
A technology for osteosarcoma and products, applied in the application field of HSDL1 in the diagnosis and treatment of osteosarcoma, can solve the problems of metastasis and recurrence rate, and achieve the effect of early diagnosis, more accurate gene diagnosis and timely gene diagnosis
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Embodiment 1
[0054] Example 1 High-throughput sequencing and analysis
[0055] The tumor tissues and adjacent tissues of osteosarcoma patients were selected for gene comparison, and the tumor tissues and adjacent tissues of 6 osteosarcoma patients were selected. All tissue samples and pathological results should be true and reliable. The research was approved by the ethics committee and the patients were informed. agree.
[0056] RNA extraction is performed on tumor tissue and para-cancerous tissues, and after RNA extraction, agarose gel electrophoresis can be used to preliminarily determine whether the quality of the extracted RNA sample is qualified or not, and whether it can be used for further transcriptome analysis. Then, the extraction of RNA samples was detected by NanoDrop1000 spectrophotometer, and the sample requirements for RNA-seq sequencing: OD260 / OD280 was 1.8-2.2.
[0057] The sequencing platform is the HiSeq 2500 high-throughput sequencing platform of Illumina, which perfo...
Embodiment 2
[0058] Example 2 Differential expression of HSDL1 gene in paracancerous tissue and tumor tissue
[0059] 1. Sample acquisition: 40 patients with osteosarcoma, the paracancerous tissues and tumor tissues were collected respectively.
[0060] 2. Acquisition of RNA in samples
[0061] The RNA extraction kit of QINGEN Company was used to extract the total RNA of cells according to the instruction.
[0062] 3. Reverse transcription
[0063] The reverse transcription of RNA was carried out using the reverse transcription kit of TAKARA company.
[0064] 4. QPCR
[0065] (1) Primer design
[0066] QPCR amplification primers were designed according to the coding sequences of HSDL1 gene and GAPDH gene in Genbank, and synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd. The specific primer sequences are as follows:
[0067] HSDL1 gene:
[0068] The forward primer is 5'-AAGGACCACAGGATATTG-3' (SEQ ID NO.3);
[0069] The reverse primer is 5'-AAGGACCACAGGATATTG-...
Embodiment 3
[0082] Example 3 Differential expression of HSDL1 protein
[0083] 1. The research object is the same as in Example 2.
[0084] 2. Extract tissue total protein
[0085] Follow the instructions of the EpiQuik Tissue / Cell Total Protein Extraction Kit for protein extraction.
[0086] 3. Western blot detection
[0087] The extracted protein was quantitatively subjected to SDS-PAGE electrophoresis, followed by membrane transfer, blocking, primary antibody incubation, secondary antibody incubation, and color development.
[0088] 4. Statistical processing
[0089] The gray value of the protein band was analyzed using Image J software, and the gray value of the HSDL1 protein band was normalized with β-actin as an internal reference. The results and data are expressed in the form of mean ± standard deviation, and SPSS13.0 statistical software is used for statistical analysis. The difference between the two is tested by t test, and it is considered statistically significant when P<...
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