CYP3A88-molecular-marker breeding method for sorting porcine reproductive and respiratory syndrome (PRRS)-resistant pigs and application thereof
A PRRS, targeted technology, applied in the field of molecular genetics, can solve problems such as differences in gene expression, immune function genes and cytokine expression levels
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Embodiment 1
[0024] Embodiment 1Genome walker method amplifies the 5' regulatory region of CYP3A88 gene
[0025] Genome extraction: Pig ear tissue was taken, and genomic DNA was extracted according to the instructions of the TIANamp genomic DNA (Tiangen) kit.
[0026] This experiment uses Clontech's GenomeWalker TM Universal Kit, its main principle is to design two gene-specific primers (GSP) in the same direction and higher annealing temperature according to the known DNA sequence, and the two uniquely designed primers (GSP) provided in the kit have a lower annealing temperature The degenerate primers, namely AP1 and AP2, were used for landing PCR reaction. The chromosomal primers for the 5′ regulatory region of the pig CYP3A88 gene are shown in the table below:
[0027]
[0028] Drop-down PCR amplification system:
[0029]
[0030] Perform touchdown PCR as follows
[0031]
[0032] The results of three Genome walker electrophoresis of pig CYP3A88 promoter are as follows: fig...
Embodiment 2
[0039] Example 2 Construction of CYP3A88 promoter vector and deletion vector, luciferase reporter system to detect its activity
[0040] Design primers CYP3A88F2 (R2) and CYP3A88F3 (R3) to PCR amplify Dudachang hybrid pig P2801 and P27 fragments respectively, CYP3A88F2, whose sequence is shown in SeqID No: 11; CYP3A88R2, whose sequence is shown in SeqID No: 12; CYP3A88F3, its sequence is shown in Seq ID No: 13; CYP3A88R3, its sequence is shown in Seq ID No: 14. Among them, MluI restriction site and HindIII restriction site were added at the 5′ of CYP3A88F2 and CYP3A88F3 respectively.
[0041]
[0042] The amplification system is:
[0043]
[0044] The PCR program was pre-denaturation at 95°C for 5 min, followed by 35 cycles of 98°C for 10 sec, 66°C for 15 sec, 72°C for 4 min, and 72°C for 10 min. PCR products were detected by 1% TBE agarose gel electrophoresis. The PCR product was recovered with a Promega gel recovery kit. The PCR recovered product was reacted in a w...
Embodiment 3
[0059] Example 3 Site-directed mutation of the 5' regulatory region -78 of the pig CYP3A88 gene and detection of luciferase activity
[0060] According to the results of the deletion experiment in Example 2, the TESS prediction software was used to analyze the 5′ regulatory region-695-+76 segment of the CYP3A88 gene, and combined with polymorphism analysis, it was found that the change from T to A at the important regulatory region-78 site caused the transcription factor Combination of YY1. The P694* vector for site-directed mutation of the YY1 binding site was constructed by using the P694 vector as the backbone vector by PCR. Primer sequences CYP3A88PF and CYP3A88PR of the P694* vector
[0061]
[0062] Amplification conditions are: 25μl system includes 2×PrimeSTAR GC Buffer (Mg 2+Plus) 12.5 μl, dNTP Mixture (2.5 mM each) 2 μl, primers (10 μM) 0.5 μl each, PrimeSTARTM HS DNA Polymerase (5 U / μl) 0.25 μl, carrier DNA 0.5 μl. The P694* vector was amplified by 16 cycles of...
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