System for rapid high-resolution gel electrophoresis
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example 1
[0098]The first test gel formulation examined was an 8% SDS-PAGE resolving gel having the following composition: 100 mM Bis-Tris, 75 mM Tricine, 4 vol. % sucrose, and 20 mM BES. The stacking gel had the following composition: 357 mM Bis-Tris and 210 mM Chloride, pH 6.5 cast on top of the resolving gel. The S:R ratio of the gel was 1:4.
[0099]Five (5) μL of Mark12™ protein marker with Ponceau S tracking dye was loaded in each lane of the gel and the gel was run at 300 V for 15 minutes in NuPAGE® MES SDS Running Buffer (Invitrogen Corp., Carlsbad, Calif.). Completion of the gel run was determined based on the migration of Ponceau S tracking dye added separately to each sample to the bottom of the gel. At the completion of the run, the gel was stained with Coomassie® G-250 using SimplyBlue™ SafeStain (from Invitrogen Corp, Carlsbad, Calif.).
[0100]FIG. 1 shows the migration pattern of the marker bands resulting from this gel formulation. The 3.5 kDa insulin B band (indicated in FIG. 1) o...
example 2
[0101]An SDS-PAGE test gel was cast essentially as described in Example 1, except that the S:R ratio was changed to 41:59 in an attempt to improve the stacking and separation of bands migrating higher than the 55.4 kDa glutamic dehydrogenase band. Five (5) μL of Mark12™ protein marker was loaded in each lane of the gel and the gel was run at 300 V for 16 minutes in MES SDS Running Buffer. Completion of the gel run was determined based on the migration the Ponceau S tracking dye to the bottom of the gel and the gel was stained with SimplyBlue™ SafeStain as above.
[0102]The resulting gel (FIG. 2) shows the migration pattern of the marker bands resulting from this gel formulation. The 3.5 kDa Insulin B band migrated the entire length of the gel, although an additional 1 min of run time was required. The 200 kDa myosin band in the outermost lanes (i.e., lanes 1, 2, 9 and 10; indicated by the asterisk) was more diffuse than the corresponding band seen in lanes 3-8. Additionally, bands mig...
example 3
[0103]An SDS-PAGE test gel was cast essentially as described in Example 2, with the following changes: the 8% (8% T / 4.4% C) resolving gel was made using 100 mM Bis-Tris and 100 mM Tricine. The 4% (4% T / 3.8% C) stacking gel cast over the resolving gel had a pH of 6.1 and was made using 357 mM Bis-Tris and 150 mM sulfuric acid. In this example, sulfuric acid was used in order to provide a leading ion (SO4−2) that migrated slower than Cl−. The S:R ratio of the gel was 41:59. Five (5) μL of Mark12™ protein marker was loaded in each lane of the gel and the gel was run at 300 V for 18 minutes in MES SDS Running Buffer. Completion of the gel run was determined based on the migration of the Ponceau S tracking dye to the bottom of the gel after which the gel was stained with SimplyBlue™ SafeStain as above.
[0104]FIG. 3 shows the migration pattern of the marker bands resulting from this gel formulation. As shown, the use of sulfuric acid in the stacking gel yielded unsatisfactory results and a...
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