Genetic molecular marker related to pork quality electrical conductivity traits
A molecular marker and molecular genetic marker technology, applied in the field of molecular markers, can solve the problems of high computational intensity, overestimation of marker effects, unreasonable setting of significance thresholds, etc., and achieve high sensitivity, good pork quality, and high conductivity. Effect
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Embodiment 1
[0020] The basic research group in this example is 303 ternary cross pigs, all from Guangxi Yangxiang Agriculture and Animal Husbandry Co., Ltd., including 131 boars and 172 sows. The measurement site for electrical conductivity properties was the long dorsi muscle between the 13th and 14th intercostals, and the measurement was completed within 45 minutes after slaughter.
[0021] (1) Genotyping and quality control
[0022] Collect pig ear tissue samples or blood samples, extract total DNA, and use GGP 50k SNP (GeneSeek, US) chip for genotyping to obtain 50,679 SNP markers covering the entire genome. According to the latest version of the pig reference genome (Sscrofa11.1), the NCBI genome comparison program (https: / / www.ncbi.nlm.nih.gov / ) was used to update the physical location of all SNP markers. SNPs with unknown genomic location are not used for association analysis. For all SNP markers on autosomes, use Plink software for quality control. The standard is individual detectio...
Embodiment 2
[0037] According to the genetic results obtained from the above screening, molecular genetic markers related to the conductivity traits of pork are shown. This molecular genetic marker is located at the 59537927 nucleic acid site of pig chromosome 4, which is an A> The C mutation corresponds to the 51st nucleic acid site of SEQ ID NO. 1 in the nucleic acid sequence table.
Embodiment 4
[0039] Those skilled in the art can easily design primers for amplifying the molecular markers or probes for identifying the molecular markers according to the molecular genetic markers of the present invention, so as to be used for the detection of the genetic markers, for example by PCR amplification. The molecular genetic markers can be cloned and sequenced to obtain the corresponding sequences, or detected by Bsm-RFLP polymorphism. Therefore, the present invention also includes primers for amplifying the molecular genetic markers or probes for identifying the molecular genetic markers, and kits containing the primers or probes.
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