Composition for detecting multiple gene mutations of lung cancer once and application of composition
A composition and technology for lung cancer, applied in the biological field, can solve the problems of cumbersome operation, long time consumption, complicated data analysis and the like
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Embodiment 1
[0076] According to the human EGFR, BRAF, HER2, KRAS, ALK, ROS1, RET, NTRK1, NTRK2, NTRK3 and MET wild-type gene sequences published by Cosmic data, EGFR, BRAF, HER2, KRAS, ALK, ROS1, RET, NTRK1, NTRK2 , NTRK3 and MET driver mutation sites and fusion sites to design specific primers and probes (see Table 1, Table 7 and Table 8 for details).
[0077] Table 7 Distribution of detection sites in LETA reaction solution
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[0081] Table 8 Distribution of detection sites in LET reaction solution B
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[0084] In this example, ALK fusion genes EMLA exon 13, ALK exon 20, ROS1 fusion genes CD74 exon 6, ROS1 exon 32, RET fusion genes KIF5B exon 16, ROS1 exon 12, NTRK1 fusion genes CD74 exon8, NTRK1 exon10, NTRK2 fusion genes TRIM24 exon12 , NTRK2 exon15, NTRK3 fusion gene ETV6exon5, NTRK3 exon15, MET skipping mutation gene MET exon14 skipping, EGFR gene mutation gene 19del, L858R, T790M, KRAS mutation gene G12D, G12C, BRAF gene muta...
Embodiment 2
[0146] Using the present invention to detect clinical samples, in November 2019, 172 clinical NSCLC FFPE samples were tested for 11 gene mutations / fusions of lung cancer (including some clinical samples with known results), and compared with the NGS method.
[0147]1. Extraction of DNA and RNA from test samples: DNA and RNA were extracted using nucleic acid extraction reagents from Xiamen Aide Biomedical Technology Co., Ltd. (model: FFPE DNA / RNA, medical device record number: Minxia Machinery Equipment No. 20150082, article number : 8.0223601X036G). After the DNA and RNA are extracted, the concentration and purity of the DNA and RNA are detected using a micro-volume ultraviolet spectrophotometer. RNA concentration should be greater than 10ng / μL, DNA concentration should be greater than 2ng / μL, OD of DNA and RNA 260 / OD 280 It should be between 1.7 and 2.1. The DNA and RNA extracted above were used as amplification templates for the detection of 11 genes of lung cancer.
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