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Composition for detecting multiple gene mutations of lung cancer once and application of composition

A composition and technology for lung cancer, applied in the biological field, can solve the problems of cumbersome operation, long time consumption, complicated data analysis and the like

Active Publication Date: 2020-06-05
AMOY DIAGNOSTICS CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, most of the current kits can only detect one or several gene mutations at a time, the detection throughput is low, it takes a long time, and the demand for samples is large
Although the NGS Panel currently on the market for scientific research is also possible to detect the above 11 genes at one time, the high price of NGS, cumbersome operation, complex data analysis, and large amount of samples also restrict the popularization and application of NGS methods.
At present, there is no PCR kit that can detect these 11 hotspot genes at the same time and at one time in clinical practice

Method used

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  • Composition for detecting multiple gene mutations of lung cancer once and application of composition
  • Composition for detecting multiple gene mutations of lung cancer once and application of composition
  • Composition for detecting multiple gene mutations of lung cancer once and application of composition

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Experimental program
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Effect test

Embodiment 1

[0076] According to the human EGFR, BRAF, HER2, KRAS, ALK, ROS1, RET, NTRK1, NTRK2, NTRK3 and MET wild-type gene sequences published by Cosmic data, EGFR, BRAF, HER2, KRAS, ALK, ROS1, RET, NTRK1, NTRK2 , NTRK3 and MET driver mutation sites and fusion sites to design specific primers and probes (see Table 1, Table 7 and Table 8 for details).

[0077] Table 7 Distribution of detection sites in LETA reaction solution

[0078]

[0079]

[0080]

[0081] Table 8 Distribution of detection sites in LET reaction solution B

[0082]

[0083]

[0084] In this example, ALK fusion genes EMLA exon 13, ALK exon 20, ROS1 fusion genes CD74 exon 6, ROS1 exon 32, RET fusion genes KIF5B exon 16, ROS1 exon 12, NTRK1 fusion genes CD74 exon8, NTRK1 exon10, NTRK2 fusion genes TRIM24 exon12 , NTRK2 exon15, NTRK3 fusion gene ETV6exon5, NTRK3 exon15, MET skipping mutation gene MET exon14 skipping, EGFR gene mutation gene 19del, L858R, T790M, KRAS mutation gene G12D, G12C, BRAF gene muta...

Embodiment 2

[0146] Using the present invention to detect clinical samples, in November 2019, 172 clinical NSCLC FFPE samples were tested for 11 gene mutations / fusions of lung cancer (including some clinical samples with known results), and compared with the NGS method.

[0147]1. Extraction of DNA and RNA from test samples: DNA and RNA were extracted using nucleic acid extraction reagents from Xiamen Aide Biomedical Technology Co., Ltd. (model: FFPE DNA / RNA, medical device record number: Minxia Machinery Equipment No. 20150082, article number : 8.0223601X036G). After the DNA and RNA are extracted, the concentration and purity of the DNA and RNA are detected using a micro-volume ultraviolet spectrophotometer. RNA concentration should be greater than 10ng / μL, DNA concentration should be greater than 2ng / μL, OD of DNA and RNA 260 / OD 280 It should be between 1.7 and 2.1. The DNA and RNA extracted above were used as amplification templates for the detection of 11 genes of lung cancer.

[...

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PUM

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Abstract

The invention discloses a composition for detecting multiple gene mutations of lung cancer once and application of the composition. The composition comprises primers and probes for detecting EGFR, KRAS, BRAF, HER2, ALK, ROS1, RET, NTRK1, NTRK2, NTRK3 and MET gene mutations of the lung cancer and distribution modes of the primers and probes. According to the composition, the design of polymerase chain reaction (PCR) 8-tubes is employed, and every two PCR 8-tubes detect 11 gene mutations / fusion states of a sample; a corresponding fusion detection reagent and internal control reagent are held inone of the PCR 8-tubes; and a corresponding mutation detection reagent is held in the other PCR 8-tube. The composition uses a fluorescent PCR method to realize one-time detection of 119 gene fusionsand 112 gene mutation types of the lung cancer, so that detection time is greatly shortened; and operation is simple, and results are accurate; and the composition meets the urgent clinical needs of tumor patients on timely diagnosis and treatment, and helps accurate detection.

Description

technical field [0001] The invention belongs to the field of biotechnology, and more specifically relates to a primer, a probe, a detection system and a kit for one-time detection of multiple gene mutations in lung cancer. Background technique [0002] Lung cancer is one of the common malignant tumors that seriously endanger human health, and 80-85% of lung cancers are non-small cell lung cancer (NSCLC). There are many types of gene mutations in NSCLC patients, among which the mutation frequencies of EGFR, HER2, KRAS, and BRAF genes are about 10-50%, 1-4%, 5-25%, and 1-2%, respectively; ALK, ROS1, RET, The frequency of NTRK1, NTRK2, NTRK3 gene fusion is about 3-7%, 1%, 1%, 0.12%, 0.02%, 0.08%, respectively, and the frequency of MET exon 14 skipping gene mutation is about 1%. A large number of clinical studies have shown that the driver gene mutation status is an important predictor of the efficacy of targeted drug therapy. Patients with EGFR, HER2, KRAS, and BRAF gene mutat...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6886C12N15/11
CPCC12Q1/6886C12Q2600/16C12Q2600/156Y02A50/30C12Q2600/118C12Q2600/112
Inventor 江风阁黄蛤目李硕卿黄珊璐陈曦王香玲宋庆涛郑立谋
Owner AMOY DIAGNOSTICS CO LTD
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