A susceptibility gene detection panel related to skin aging characteristics and its application
A technology for skin aging and susceptibility genes, which is applied in the determination/inspection of microorganisms, biochemical equipment and methods, DNA/RNA fragments, etc. It can solve the problems of cumbersome gene chip method, complicated operation, and long time consumption, and achieve high accuracy. High, high detection efficiency, low cost effect
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Embodiment 1
[0033] 1. Detection scheme of susceptibility genes related to skin aging characteristics
[0034] According to the relationship between human skin aging characteristics and genetic genes, susceptibility genes and SNP sites related to skin aging characteristics were determined (as shown in Table 1), and a detection panel was formed.
[0035] For all SNP sites involved in the detection panel, design multiple PCR amplification primer pairs SEQ ID NO.1-SEQID NO.90 nucleotide sequence, and single base extension primer SEQ ID NO. The nucleotide sequence shown in 113.
[0036] Using human genomic DNA as samples (oral mucosa, peripheral blood, tissue), amplification and extension products were obtained by multiplex PCR amplification technology.
[0037] Matrix-assisted laser desorption ionization time-of-flight mass spectrometry was used to perform SNP genotyping of samples, to evaluate individual skin conditions from a genetic perspective, and to provide a scientific basis for preci...
Embodiment 2
[0040] Example 2 Sample extraction and analysis
[0041] In order to verify the accuracy and validity of the primers for the detection panel of the present invention for detecting susceptibility genes related to skin aging characterization, 2 samples were selected, numbered RY-BS-1 and RY-BS-2 respectively, and each sample was set Three duplicate wells were used for SNP typing on the nucleic acid mass spectrometry platform. The process is as follows:
[0042] A. Oral mucosal DNA extraction: DNA extraction from oral mucosal exfoliated cells was carried out using Hangzhou Biori oral swab genomic DNA extraction kit. Add a certain amount of absolute ethanol to WB1 and WB reagents. Take out the sampling cotton swab from the sampling tube and transfer it to a 2ml centrifuge tube, cut the cotton swab from its stem with scissors; add 600uL Lysis Buffer and 10uL PKSolution, shake and mix for 15 seconds; incubate at 56°C for 15 minutes; Add 300uL of absolute ethanol to the centrifuge ...
Embodiment 3
[0048] Example 3 Analysis of gene detection results
[0049] SNP genotyping was performed by matrix-assisted laser desorption ionization time-of-flight mass spectrometry, and the detection results were output by TYPER4.0 software. Table 2 and Table 3 are respectively the SNP site gene detection results of Examples RY-BS-1 and RY-BS-2. It can be seen from Table 2 and Table 3 that the genotypes of the 45 sites of the two examples are all It can be detected accurately, and the detection rate is 100%; after the comparison of 3 genotypes in all loci, the coincidence rate reaches 100%, and 3 of the 2 loci of the RY-BS-1 sample of Example RY-BS-1 are randomly selected. The multiple-hole mass spectrum is shown and explained in the accompanying drawings, see the accompanying drawings for details.
[0050] The SNP site gene detection result of table 2 embodiment sample RY-BS-1
[0051] SNP site Test results SNP site Test results SNP site Test results rs1001179 ...
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