Reaction solution capable of improving specificity, primer pair, probe and kit for detecting canine parainfluenza
A detection kit and technology for canine parainfluenza virus, applied in the field of molecular biology, can solve the problems of poor specificity of reverse transcription reaction RT-PCR non-specific amplification, poor specificity of nucleic acid detection reagents for canine parainfluenza virus detection reagents, etc. Achieve the effects of improving specificity, realizing specific detection, and improving the efficiency of reverse transcription reaction
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Embodiment 1
[0027] Preparation of reaction solution for reverse transcription reaction and reverse transcription reaction:
[0028] In this embodiment, a conventional reaction solution and a reaction solution of the present invention are configured, and the reverse transcription reaction is performed using the MS2 bacteriophage conserved region (SEQ ID No: 4) as a template, and a set of primer pairs for the reverse transcription reaction is designed to be 100% identical in sequence Primers (SEQ ID No:5 / SEQ ID No:6), another set of primers with one base mismatch (SEQ ID No:7 / SEQ ID No:8).
[0029] The reverse transcription reaction uses the SMART MMLV reverse transcriptase system of Bao Biological Company. One group prepared the reaction solution according to the kit instructions, and the other group prepared the reaction solution according to the kit instructions and added recA protein (concentration: 0.01%) and ATP (concentration 100ng / L), the primers were entrusted to Guangzhou Aiji Bio...
Embodiment 2
[0046] Reaction solution preparation and PCR amplification for PCR reaction:
[0047] In this embodiment, the cDNA in Example 1 is used as a template for PCR, and the reagents are TaKaRaEx from Treasure Biological Company. PCR kit, the reaction solution was prepared according to the kit instructions, and the primers were entrusted to Guangzhou Aiji Biosynthesis.
[0048] Forward primer (SEQ ID No:9): tgaaggcgta cactgcc
[0049] Reverse primer (SEQ ID No: 10): aagcatctca tatgcaccct
[0050] Table 2
[0051]
[0052] Electrophoresis results such as figure 2 shown.
[0053] After three verifications, no non-specific amplification was found in the group after adding recA protein and ATP, which confirmed that the use of recA protein and ATP can improve the specificity of RT-PCR.
Embodiment 3
[0055] Primer pair, probe and preparation method for detecting canine parainfluenza virus
[0056] In this example, primer pairs were designed for the conserved region of canine parainfluenza virus.
[0057] After downloading canine parainfluenza genome data from different countries and regions from NCBI, DNAMAN was used for comparative analysis, and primer pairs and probes were designed for the conserved regions of canine parainfluenza genes. The sequences of primer pairs and probes are as follows:
[0058] Forward primer (SEQ ID No: 1): 5'G (amino group) TCCTAATGCAGGCATG 3';
[0059] Reverse primer (SEQ ID No:2): 5'C (amino group) AGGTTGGTCTGGCG 3'
[0060] Fluorescent probe (SEQ ID No: 3): 5'FAM-ATAGT (amino group) GACTTGCAAGTGCATGACT-BHQ13'.
[0061] In this embodiment, the preparation of primers includes: designing primers for the conserved region of canine parainfluenza virus such as primers shown in SEQ ID No: 1, SEQ ID No: 2, and using an amino group to base the 5' e...
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