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Nucleic acid sequence sequencing linker and method of using same to construct sequencing library

A technology for sequencing adapters and nucleic acid sequences, which is applied in the field of molecular biology, can solve the problems of limiting ctDNA sensitivity and specificity, large background noise interference, and low mutation frequency, and achieve the effects of improving positive prediction ability, cost saving, and convenient operation

Pending Publication Date: 2019-09-20
DALIAN GENTALKER BIO-TECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, due to the complex experimental process technology of NGS, some amplification and sequencing errors will inevitably be introduced in the process of library construction, target region capture, and sequencing. These errors are called background noise, and ctDNA detection often has a relatively high mutation frequency. Low, subject to background noise interference, low-frequency mutations from ctDNA samples are often submerged in background noise, resulting in false negative or false positive results, which limits the sensitivity and specificity of ctDNA detection

Method used

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  • Nucleic acid sequence sequencing linker and method of using same to construct sequencing library
  • Nucleic acid sequence sequencing linker and method of using same to construct sequencing library
  • Nucleic acid sequence sequencing linker and method of using same to construct sequencing library

Examples

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Embodiment 1

[0034] Example 1 Nucleic acid sequence sequencing linker of the present invention

[0035] 1. The nucleic acid sequence sequencing adapter of the present invention

[0036] like figure 1 As shown, a short Y linker is connected to one end of the sequenced insert. The short Y linker includes an upstream primer F and a downstream primer R. The upstream primer F and the downstream primer R have partially complementary sequences, and they respectively contain complementary tag sequences UMI and UMI' , the tag sequence UMI and the tag sequence UMI' are located in the complementary region formed by the upstream primer F and the downstream primer R; a short Y linker is also connected to the other end of the sequenced insert, except that the upper and lower sequences of the upstream primer F and the downstream primer R are reversed. The tag sequence UMI is composed of any arrangement of A, G, C, and T, and the number of bases in the tag sequence UMI is preferably 4-6.

[0037] In one...

Embodiment 2

[0065] Example 2 Construction and capture of libraries containing nucleic acid sequence sequencing adapters of the present invention

[0066] (1), library construction

[0067] The ctDNA standard product was purchased from Horizon Discovery Company, the name is Multiplex I cfDNAReference Standard Set, and the article number is HD780. The mutation sites of the ctDNA standard product include 8 mutation sites of EGFR, KRAS, NRAS, and PI3KCA genes. The standard used in this experiment The mutation frequency of the product was 0.5%.

[0068] Divide the experiment into different groups according to different initial amounts of library construction, and take 10ng, 20ng or 30ng of standard ctDNA for sample library construction, including ctDNA end repair, end-added A and short Y adapter mixture ligation reaction, magnetic beads Purification, PCR amplification using long Y primers and other processes.

[0069] 1. Use the enzyme reaction to perform end repair and A addition on the ext...

Embodiment 3

[0096] Example 3. Sequencing result analysis and method verification

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Abstract

The invention provides a nucleic acid sequence sequencing linker and a method of using the same to construct a sequencing library. The sequencing linker includes a long Y primer and a short Y linker; the short Y linker and the long Y primer are connected to the two ends of an inserted fragment under sequencing respectively; the short Y linker has an upstream primer F and a downstream primer R which are partially complementary to each other; the long Y primer has an upstream primer P5 and a downstream primer P7; the short linker herein is used to perform tag identifying on different molecules in a same library, while the long Y primer is used to perform tag identification on different libraries. The nucleic acid sequence sequencing linker and the method herein are suitable for more accurately recognizing information of mutation sites, positive predicting capacity of a detection system can be improved greatly, and the problems in liquid biopsy application are solved.

Description

technical field [0001] The invention relates to the technical field of molecular biology, in particular to a nucleic acid sequence sequencing connector and a method for constructing a sequencing library. Background technique [0002] Liquid biopsy makes up for the lack of tissue detection. Different patients with the same cancer type, different treatment stages of the same tumor patient, and different regions of the same tumor tissue have certain differences in the biological characteristics of the tumor. Liquid biopsy can not only overcome the heterogeneity of tissue detection, but also has the characteristics of simplicity, safety, non-invasive, real-time, etc., especially for patients who cannot undergo surgery or puncture, or where the tumor location makes sampling difficult. Methods that can make up for the limitations of tissue detection have played an important role in the real-time assessment of tumor targeted therapy and drug resistance monitoring in recent years. ...

Claims

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Application Information

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IPC IPC(8): C12Q1/6806C12N15/10C12N15/11C40B50/06C40B80/00C40B70/00
CPCC12Q1/6806C12N15/1093C40B50/06C40B80/00C40B70/00
Inventor 赵金银李宏志刘琦许立志
Owner DALIAN GENTALKER BIO-TECH CO LTD
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