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Spiro three-membered ring, spiro five-membered ring peptidyl deformylase inhibitor

A peptide deformylase and inhibitor technology, applied in the field of spiro five-membered ring peptide deformylase inhibitors and new spiro three-membered rings, can solve the problems of metabolic instability, body toxicity, poor activity, etc.

Active Publication Date: 2019-12-13
广东和博制药有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0009] Although many PDF inhibitors have been developed for preclinical research, and even some compounds have entered the clinic (such as formula (b) ~ (d)), but due to the nature of the compound itself, the activity is not good, or it shows Clinical toxicity, ultimately failed to market
For example: actinomycin Actinonin is the first PDF inhibitor discovered, which shows good activity against Gram-positive bacteria and negative bacteria, but due to the instability of metabolism in the body, it eventually has no activity in vivo
LBM415, entered Phase I clinical (Phase I) trial of antibacterial activity, has broad-spectrum activity, but found that high doses can cause methemoglobinemia (Clin.Pharmacol. Ther.2011, 90, 256); GSK1322322, also terminated antibacterial activity by FDA Phase I clinical study of the same reason, the occurrence of metabolically active compounds, causing toxicity to the body (see the project number NCT01818011 in ClinicalTrials.gov for reasons for termination of clinical trials)

Method used

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  • Spiro three-membered ring, spiro five-membered ring peptidyl deformylase inhibitor
  • Spiro three-membered ring, spiro five-membered ring peptidyl deformylase inhibitor
  • Spiro three-membered ring, spiro five-membered ring peptidyl deformylase inhibitor

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0122] (S)-5-((R)-2-((N-hydroxycarboxamido)methyl)caproylamido)-N-(1H-pyrazol-3-yl)-5-azaspiro[2.4 ]Synthesis of heptane-6-amide

[0123]

[0124] Step 1: Add 3-aminopyrazole (1.50g, 18.0mmol), trimethylamine (4.5g, 20.6mmol), 4-(dimethylamino)pyridine (0.15g, 1.2mmol) in 60mL dioxane, Add Boc after stirring to dissolve 2 O, heated to reflux for 8h, the reaction was completed, the solvent was spun out, then diluted with EA and extracted, washed with 10% citric acid and saturated brine successively, the organic phase was concentrated to obtain an oil, and the column (PE / DCM=2 / 1) The product was obtained as a white solid (1.6 g, yield 48%).

[0125]Step 2: the operation is as in step 1 in the synthetic general formula (X1). Add 20mL DMF to the acid (2.05g, 8.5mmol) to dissolve, add N-methylimidazole (1.54g, 18.7mmol) under ice cooling, then slowly add MsCl (1.07g, 9.4mmol), stir for 15min and then add Boc Protected amine (1.56g, 8.5mmol), the reaction was detected by TLC...

Embodiment 2

[0136] 5-Fluoro-2-((S)-5-((R)-2-((N-hydroxycarboxamido)methyl)hexylcarbonyl)-5-azaspiro[2.4]heptane-6-amide base) synthesis of pyridine N-oxygen compounds

[0137]

[0138] Step 1: The operation is as in Step 1 in the synthesis of general formula (X1).

[0139] Step 2: The operation is as in step 2 in the synthesis of general formula (X1) (2.1 g, white solid, two-step yield 68%).

[0140] Step 3: The operation is as in step 3 in the synthesis of general formula (X2).

[0141] Step 4: The obtained oil (242mg, 0.46mmol) was dissolved in ethyl acetate (3mL), hydrogen peroxide-urea complex (133mg, 1.40mmol) and phthalic anhydride (207mg, 1.40mmol) were added. The mixture was stirred at room temperature for 2 hours. After the reaction was completed, the reaction was quenched with sodium thiosulfate and extracted with ethyl acetate. Drying and concentration of the organic phase gave crude product.

[0142] Step 5: The operation is as in step 4 in the synthesis of general for...

Embodiment 3

[0148] (S)-N-(5-(tert-butyl)isoxazol-3-yl)-5-((R)-2-((N-hydroxycarboxamido)methyl)hexylcarbonyl)-5- Synthesis of Azaspiro[2.4]heptane-6-amide

[0149]

[0150] Step 1: The operation is as in Step 1 in the synthesis of general formula (X1).

[0151] Step 2: The operation is as in step 2 in the synthesis of general formula (X1) (1.4 g, white solid, two-step yield 47%).

[0152] 1 H NMR (400MHz,D 2 O)δ6.14(s,1H),4.44-4.41(m,1H),3.12-2.93(m,2H),2.19(dd,J=13.4,8.9Hz,1H),1.86(dd,J=13.4 ,6.1Hz,1H),0.52-0.29(m,4H).

[0153] 13 C NMR (101MHz,D 2 O) δ183.22, 167.90, 157.06, 93.24, 60.23, 52.67, 37.13, 32.51, 27.67, 20.09, 9.86, 8.49.

[0154] Step 3: The operation is as in step 3 in the synthesis of general formula (X2).

[0155] Step 4: The operation is as in step 4 in the synthesis of general formula (X2), column chromatography (DCM:MeOH=10:1) gives a white solid, and the two-step yield is 28%.

[0156] LC-MS(ESI):[M+1] + =435.24,t R =2.25min.

[0157] 1 H NMR (400MHz,...

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Abstract

The invention discloses novel peptide deformylase inhibitors containing spiro three-membered rings or spiro five-membered rings, and the inhibitors have antimicrobial activity and antineoplastic activity. The peptide deformylase inhibitors containing spiro rings such as the spiro three-membered rings or the spiro five-membered rings provided in the invention can be taken as a class of novel antibacterial agents, by inhibiting activity of peptide deformylase required in synthesis of bacterial proteins, the inhibitors have effects on gram-positive bacterium strains which have drug resistance to a plurality of antibiotics, and have no influences on synthetic processes of human proteins, thus the bacteria are selectively killed; and the peptide deformylase inhibitors containing the spiro rings such as the spiro three-membered rings or the spiro five-membered rings provided in the invention can also be taken as a class of novel anti-cancer drugs, by inhibiting peptide deformylase in mitochondria of cancer cells, the inhibitors can have influences on energy balance of the cells, thus mitochondrial membranes are depolarized, ATP is depleted and apoptosis is promoted, and the inhibitors have relatively-good inhibition activity on a plurality of cancer cell bacterial strains such as colorectal cancer cell bacterial strains, lung cancer cell bacterial strains, stomach cancer cell bacterial strains and liver cancer cell bacterial strains under relatively-low concentrations.

Description

technical field [0001] The invention belongs to the technical research field of antibacterial and anticancer drugs, and relates to a class of peptide deformylase inhibitors, in particular to novel spiro three-membered ring and spiro five-membered ring-like peptide deformylase inhibitors. Background technique [0002] Antibiotics refer to a series of chemical substances that can inhibit and kill pathogens at a certain concentration, including metabolites produced by microorganisms, animals and plants, as well as chemically synthesized or semi-synthesized compounds. Antibiotics not only refer to antibacterial substances, but also antitumor, antiviral, antiparasitic and other substances also belong to the category of antibiotics. Antibiotics are an important pillar enabling us to live longer, healthier lives and benefit from modern medicine. [0003] With the emergence and widespread use of antibiotics, the problem of antibiotic resistance has become increasingly prominent. Th...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C07D403/12C07D401/12C07D413/12C07D401/14C07D417/12C07D403/04C07D413/14C07D471/04C07D209/96C07D409/12A61P31/04A61P35/00
CPCC07D209/96C07D401/12C07D401/14C07D403/04C07D403/12C07D409/12C07D413/12C07D413/14C07D417/12C07D471/04
Inventor 胡文浩吕峰平汤洋陈晨韦建海
Owner 广东和博制药有限公司
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