Set of single nucleotide polymorphism (SNP), biological marker and haplotype block tag single nucleotide polymorphisms (tagSNPs) for diagnosing hyperbilirubinemia

A technology of hyperbilirubinemia and biomarkers, applied in the direction of DNA / RNA fragments, recombinant DNA technology, etc., can solve the problems of neonatal disability, uncertainty, early detection and early intervention, etc.

Inactive Publication Date: 2012-07-04
SHANGHAI JIAO TONG UNIV
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Problems solved by technology

[0003] The traditional clinical diagnosis method is to measure the total bilirubin level and indirect bilirubin level of the patient, but due to the influence of various factors such as individual differences, ethnicity, region, gender, feeding mode, etc., the diagnostic standard of jaundice bilirubin concentration is often Not applicable, such as premature infants, low birth weight infants, etc., often lead to disability and death of newborns due to failure to detect and intervene early
It is precisely because the traditional diagnostic methods of hyperbilirubinemia are unstable and uncertain, so it is very important to find and formulate an effective new standard to realize the diagnosis, prediction and prevention of bilirubin metabolism diseases

Method used

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  • Set of single nucleotide polymorphism (SNP), biological marker and haplotype block tag single nucleotide polymorphisms (tagSNPs) for diagnosing hyperbilirubinemia
  • Set of single nucleotide polymorphism (SNP), biological marker and haplotype block tag single nucleotide polymorphisms (tagSNPs) for diagnosing hyperbilirubinemia
  • Set of single nucleotide polymorphism (SNP), biological marker and haplotype block tag single nucleotide polymorphisms (tagSNPs) for diagnosing hyperbilirubinemia

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Embodiment

[0024] Uridine diphosphate glucuronosyltransferase 1A1 (UGT1A1) in humans is the only glucuronidase that metabolizes the endogenous compound bilirubin. Association analysis studies have shown that the SNP sites of the UGT1A1 gene, including the UGT1A1 promoter c.-54_-53insTA, p.P34Q, p.H39D, p.W40R, p.G71R, p.F83L, p.C156R, p.P229Q and other sites in the gene coding region can lead to CN I, CN II and The occurrence of GS disease.

[0025] In this example, through the method of resequencing large fragments (spanning 17.7kb), in a large sample composed of 273 randomly selected Chinese, search for and obtain the UGT1 gene cluster (the UGT1 gene cluster structure diagram is shown in figure 1 shown; wherein, the gray squares below each exon indicate the resequencing region, and this figure is drawn to scale, where the 1 on the left of the arrow indicates the resequencing region within the UGT1 gene cluster (the total span is about 17.7kb)) A total of 101 SNP sites, including 15 ne...

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Abstract

The invention relates to a set of single nucleotide polymorphism (SNP), a biological marker and haplotype block tag single nucleotide polymorphisms (tagSNPs) for diagnosing hyperbilirubinemia in the technical field of biology. An SNP locus is one of the fifteen SNP loca shown in a table, and the biological marker is 1A4 intron SNPc.867+101G>T. The set of the SNP, the biological marker and the haplotype block tagSNPs can detect whether an individual has the risk of diseases or not, diagnose specific types of the hyperbilirubinemia suffered by the individual according to difference of the SNP loca of a specific marker, and achieve the purposes of early prediction, early diagnosis, early intervention and early treatment. The biological marker can further be used for developing a diagnostic reagent kit and can be applied to clinical research, analysis and diagnosis.

Description

technical field [0001] The invention relates to a collection of SNPs, biomarkers and haplotype block tagSNPs in the field of biotechnology, in particular to a collection of SNPs, biomarkers and haplotype block tagSNPs for diagnosing hyperbilirubinemia. Background technique [0002] Hyperbilirubinemia refers to a disease in which bilirubin accumulates in the body due to slow metabolism or metabolic disorder in the physiological metabolism process, and is mainly manifested clinically as jaundice symptoms. Hyperbilirubinemia mainly includes three types: Crigler-Najjar I (CN I), Crigler-Najjar II (CN II) and Gilbert syndrome (GS). CN I and CNII are hereditary hyperbilirubinemia that occurs in newborns and infants. The former is often accompanied by bilirubin encephalopathy, and the neurotoxic effect of bilirubin causes pathological damage to brain tissue. Early prevention and treatment can cause sequelae or death, and clinical drug treatment is ineffective. Type I patients have...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N15/11
Inventor 吴强杨静黄海燕
Owner SHANGHAI JIAO TONG UNIV
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