NPPA (natriuretic proatrial peptide A) gene SNP (Single Nucleotide Polymorphisms) detection specific primer and liquid phase chip
A detection solution and specific technology, applied in the field of molecular biology, can solve the problems of high false positive rate, low sensitivity, easy contamination of samples, etc., and achieve the effect of avoiding cross-reaction, improving sensitivity and strong scalability.
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Embodiment 1
[0022] Embodiment 1 NPPA gene SNP detection liquid phase chip mainly includes:
[0023] 1. ASPE primers
[0024] Specific primer sequences were designed for the wild-type and mutant types of the three common genotypes of NPPA gene, rs5063 (A>G), rs5065 (T>C) and rs5067 (A>G). ASPE primers consist of "Tag sequence + specific primer sequence". The ASPE primer sequences are shown in the table below:
[0025] Table 1 ASPE primer sequence (Tag sequence+specific primer sequence) of NPPA gene
[0026]
[0027] Each ASPE primer consists of two parts, the 5' end is a specific tag sequence for the anti-tag sequence on the corresponding microsphere, and the 3' end is a primer fragment specific for mutant or wild type (as shown in Table 1 above). All ASPE primers were synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd. After synthesis, each primer was prepared into 100pmol / mL stock solution with 10mmol / L Tris Buffer.
[0028] 2. Microspheres coated with anti...
Embodiment 2
[0040] Example 2 Detection of samples using the NPPA gene detection liquid chip described in Example 1
[0041] The formulations of the various solutions are as follows:
[0042] 50mM MES buffer (pH5.0) formula (250ml):
[0043] reagent
source
Final concentration
Dosage per 250ml
MES(2[N-Morpholino]
Sigma M-2933
0.05M
2.44g
5M NaOH
Fisher SS256-500
---
5 drops
[0044] 2 x Tm hybridization buffer
[0045] reagent
source
Final concentration
Dosage per 250ml
1M Tris-HCl, pH 8.0
SigmaT3038
0.2M
50ml
5M NaCl
Sigma S5150
0.4M
20ml
[0046] Triton X-100
Sigma T8787
0.16%
0.4ml
[0047] After filtration, store at 4°C.
[0048] The ExoSAP-IT kit was purchased from the US USB company.
[0049] Biotin-labeled dCTP was purchased from Shanghai Sangon Bioengineering Technolo...
Embodiment 3
[0112] Example 3 Detection of NPPA gene SNP sites by liquid-phase chips with different ASPE primers
[0113] 1. Design of liquid chip preparation (selection of Tag sequence and Anti-Tag sequence)
[0114] Taking the liquid chip for detection of NPPA gene rs5063 (A>G) site mutation as an example, the specific primer sequences at the 3' end of the ASPE primer were designed for the wild type and mutant type of rs5063 (A > G), while the specific primer sequences at the 5' end of the ASPE primer were designed. The Tag sequence is selected from SEQ ID NO.1 to SEQ ID NO.6. Correspondingly, the anti-tag sequence that is complementary to the corresponding tag sequence coated on the microspheres is selected from SEQ ID NO.13 to SEQ ID NO.18. The specific design is shown in the following table (Table 7). The synthesis of ASPE primers, the coating of microspheres with anti-tag sequences, amplification primers, detection methods, etc. are as described in Example 1 and Example 2.
[0115]...
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