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BEST1 novel mutation disease-causing gene for retinosis diseases and kit thereof

A technology for retinal degeneration and disease-causing genes, applied in disease diagnosis, genetic engineering, plant genetic improvement, etc., can solve the problems of high-repetition and low-complexity regions, expensive, and incomplete coverage of exon regions, etc., to reduce cumbersome Program, low cost, wide range of practical effects

Active Publication Date: 2019-01-01
THE FIRST AFFILIATED HOSPITAL OF ARMY MEDICAL UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The sequencing efficiency is high, but the price is expensive. In addition, this method is suitable for point mutations and deletion insertion mutations (micro mutations) within 20 bp, as well as homozygous deletion detection at the exon level, and is not suitable for large fragment copy number variations of heterozygous genes. The detection of special types of mutations such as dynamic mutations and complex recombinations is also not suitable for the detection of genomic structural variations (such as large deletions, duplications, and inversion rearrangements), large heterozygous insertion mutations (such as Alu-mediated insertions) and Mutations located in gene regulatory regions and deep intronic regions
In addition, due to the presence of high-repetition low-complexity regions or pseudogenes in some genes, the detection cannot completely cover all exon regions

Method used

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  • BEST1 novel mutation disease-causing gene for retinosis diseases and kit thereof
  • BEST1 novel mutation disease-causing gene for retinosis diseases and kit thereof
  • BEST1 novel mutation disease-causing gene for retinosis diseases and kit thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0030] Example 1 Obtaining Biological Samples

[0031] From 2015 to 2018, a total of 10 cases of BEST disease were collected, 7 males and 3 females. The clinical phenotypes were Best oval macular degeneration, and the samples were peripheral venous blood from patients with the disease. All family members participating in the research of the present invention signed the informed consent.

Embodiment 2D

[0032] Example 2DNA Extraction

[0033] Use the high salt precipitation method to extract the genomic DNA in each blood sample, use a spectrophotometer to measure the concentration and purity of the DNA, and obtain the OD of the genomic DNA of each sample 260 / OD 280 They are all located between 1.7-2.0, the concentration is not less than 200ng / microliter, and the total amount is not less than 30 micrograms.

Embodiment 3

[0034] Embodiment 3 primer design and PCR reaction

[0035] Referring to the human genome sequence database, design PCR-specific primer pairs corresponding to exons 1-10 of the BEST1 gene. The specific content is shown in Table 1. The sequences corresponding to exons 1-10 are as follows: figure 2 shown.

[0036] Table 1 PCR-specific primer pairs corresponding to exons 1-10 of BEST1 gene

[0037]

[0038]

[0039] Table 2 Genes corresponding to exons 1-10

[0040]

LOCUS

Exon 1

NG_009033:1924..2075

exon 2

NG_009033:5224..5318

exon 3

NG_009033:5835..6068

Exon 4

NG_009033:6961..7115

Exon 5

NG_009033:7504..7581

exon 6

NG_009033:8263..8415

exon 7

NG_009033:9615..9695

Exon 8

NG_009033:10009..10160

Exon 9

NG_009033:12372..13010

Exon 10

NG_009033:14221..14239

[0041] Then, prepare the PCR reaction system of each genomic DNA sample according to the fo...

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Abstract

The invention relates to a BEST1 novel mutation disease-causing gene for retinosis diseases, and belongs to the field of molecular biology. Compared with the nucleotide sequence of the BEST1 gene shown in SEQ ID NO:1, a nucleotide sample of the novel mutation disease-causing gene has the following change of nucleotide c.1242G>A. The invention also relates to a mutant polypeptide coded by the novelmutation disease-causing gene. The BEST1 novel mutation disease-causing gene has the advantages that the mutation of c.1242G>A site of the BEST1 gene is related with the retinosis diseases; a kit forscreening the retinosis diseases is further provided, the retinosis diseases caused by the mutation disease-causing gene can be screened, and the guidance is provided for timely finding and timely treatment of a patient.

Description

technical field [0001] The invention belongs to the field of biotechnology, and relates to a new mutation-causing gene of BEST1 for retinal degenerative diseases and a kit thereof. Background technique [0002] Retinal degeneration, belonging to cone and rod dystrophy, is a group of genetic diseases characterized by night blindness, narrowed vision, fundus bone cell-like pigmentation and photoreceptor dysfunction. Sex-linked recessive inheritance, autosomal recessive or dominant inheritance can be seen, and sporadic. Human BEST1 gene mutations are associated with at least 4 different retinal degenerative diseases, which are collectively referred to as Best diseases, including: Best yolk-like macular dystrophy (BVMD), autosomal recessive Best disease (ARB), adult-onset yolk-like macular dystrophy Dystrophy and autosomal dominant vitreoretinopathy. Best macular dystrophy (BMD), or juvenile-onset vitelloid macular dystrophy, is an irregular autosomal dominant disorder with so...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/12C07K14/47C12Q1/6883G01N33/68
CPCC07K14/47C12Q1/6883C12Q2600/156G01N33/68G01N2800/164
Inventor 李世迎孟晓红刘勇任佳云龙艳玲徐碧薇陶琴殷欣阴正勤
Owner THE FIRST AFFILIATED HOSPITAL OF ARMY MEDICAL UNIV
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