Applications of echinococcus granulosus mitochondrion gene ND6
A technology of Echinococcus granulosus and Echinococcus granulosus, applied in the application field of Echinococcus granulosus mitochondrial ND6 gene, achieving high reliability and improving detection efficiency
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Embodiment 1
[0026] Example 1: Primer Design
[0027] According to the ND6 gene sequence of the complete mitochondrial genome of Echinococcus granulosus (sequence number: KJ559023.1) in GenBank, a pair of primers was designed using Primer Premier 5.0 software. upstream primer A 1 : 5'-TTTCGTGCTGTAGATGGT-3' (shown in SEQ ID NO: 1), downstream primer A 2 : 5'-CACAGATTTCAAAGGGTT-3' (shown in SEQ ID NO: 2), the amplified fragment is 558bp (complete ND6 wild-type gene 456bp and its upstream partial tRNA-GLU sequence 38bp, downstream partial tRNA-TYR sequence 64bp Composition, the sequence is shown in SEQ ID NO:5). The primer sequences were synthesized by Biotechnology (Shanghai) Co., Ltd.
Embodiment 2
[0028] Embodiment 2: PCR amplification
[0029] The amplification system is 20 μL: 2×Taq PCR MasterMix 10 μL, Primer A 1 、A 2 0.5 μL each, 4.0 μL template DNA, ddH 2 O 5 μL, mix gently and centrifuge briefly for 15s, at the same time, add ddH 2 O was used instead of template DNA as a blank control. Amplification conditions: pre-denaturation at 94°C for 3min; denaturation at 94°C for 10s, annealing at 58°C for 20s, extension at 72°C for 30s, a total of 30 cycles; final extension at 72°C for 5min. After the reaction, 10 μL of the amplified product was identified by 1% agarose gel electrophoresis. Parallel experiments were repeated 3 times.
Embodiment 3
[0030] Example 3: PCR amplification of Echinococcus granulosus cyst DNA
[0031]Echinococcus granulosus cysts were enzymatically hydrolyzed using Animal Tissue Direct PCR Kit (Foregene, Chengdu, China). Add 100μl Buffer AL and 4μl Foregene Protease to a 2ml centrifuge tube, and vortex slightly to mix. Put 5-10 mg of the treated cyst into the centrifuge tube, vortex slightly to mix, incubate at 65°C for 20 minutes, treat at 95°C for 5 minutes, and centrifuge at 12,000 rpm for 5 minutes. Then transfer the supernatant to a new centrifuge tube and store it at -20°C for later use or use it directly.
[0032] with synthetic primer A 1 、A 2 , using the above sample as a template, amplified according to the method of Example 2, the results are shown in figure 1 , the size of the band is in line with the expected result, and the band is clear, and there is no band in the negative control; in addition, after gene sequencing by the reagent company, the result is in line with expectat...
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