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c-KIT somatic mutation gene detecting kit and detecting method thereof

A technology of somatic cell mutation and somatic cells, which is applied in biochemical equipment and methods, microbial measurement/testing, DNA/RNA fragments, etc., can solve the problems of limited clinical application, low sensitivity, and high detection cost, and achieve detection High sensitivity, high detection sensitivity, and the effect of a large number of detection sites

Active Publication Date: 2018-11-30
PRIMBIO GENES BIOTECH WUHAN CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among them, the Sanger sequencing method has high accuracy as the gold standard, but its sensitivity is low, it takes a long time, and it is difficult to be used in clinical detection; the HRM method detection has higher requirements on the performance of the instrument, and the sensitivity is not high
In addition, several companies use fluorescent PCR method to detect c-KIT mutations, but the detection sites are limited to 1-2. The reason is that blocking probes or locked nucleic acid modifications are added to the detection reagents, the detection cost is high, and the number of detection sites is far away. Less than the number of clinically required tests, so the clinical application is limited

Method used

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  • c-KIT somatic mutation gene detecting kit and detecting method thereof
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  • c-KIT somatic mutation gene detecting kit and detecting method thereof

Examples

Experimental program
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Effect test

Embodiment 1

[0035] The present invention proposes a primer and a probe for detecting c-KIT somatic gene mutation, including a primer and a probe for detecting the mutation of exon 11 of the c-KIT gene, and a primer and probe for detecting the c-KIT gene mutation. Primers and probes for the mutation of exon 9 of the gene, primers and probes for detecting the mutation of exon 13 of the c-KIT gene, primers and probes for detecting the mutation of exon 17 of the c-KIT gene needle; the primer pair for detecting c-kit Exon11W557G mutation is SEQ ID NO:1, SEQ ID NO:5, and the detection probe is SEQ ID NO:7; the primer pair for detecting c-kit Exon11V559D mutation It is SEQ ID NO: 2, SEQ ID NO: 5, and the detection probe is SEQ ID NO: 7; the primer pair for detecting the c-kitExon11V560D mutation is SEQ ID NO: 3, SEQ ID NO: 5, and the detection probe The needle is SEQ ID NO: 7; the primer pair for detecting c-kit Exon11L576P mutation is SEQ ID NO: 4, SEQ ID NO: 6, and the detection probe is SEQ I...

Embodiment 2

[0092] Example 2: Detection of c-KIT somatic mutation gene in clinical samples using the kit of Example 1

[0093] 1. Select 5 GIST FFPE samples with known clinical results.

[0094] 2. Using Qiagen GeneRead DNAFFPE Kit to extract DNA from the above five clinical samples.

[0095] 3. Using nanodrop2000 to measure the DNA concentration and purity of the above five samples, the results are as follows:

[0096] Table 2

[0097] sample number

mutation type

Concentration (ng / μl)

260 / 280

20170515

W557K558del

84.5

1.96

20170517

D816V

75.0

1.82

20180109

K642E

42.6

1.72

20180213-1

Wild type

92.2

1.80

20180213-2

Y503F504insAY

55.4

1.75

[0098] 4. Dilute the DNA sample with known concentration in step 3 to 5ng / μL for later use

[0099] table 3

[0100] sample number

Sample concentration (ng / μl)

Sample volume (μl)

TE volume (μl)

Final concentration (ng / μl)...

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PUM

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Abstract

The invention relates to a c-KIT somatic mutation gene detecting kit and a detecting method thereof. The kit comprises primers and probes for detecting c-KIT somatic cell gene mutation. The primers and the probes are specifically the primer and the probe for detecting a No. 11 exon of a c-KIT gene, wherein a primer sequence is as shown in SEQ ID NO: 1-6, and a probe sequence is as shown in SEQ IDNO: 7-8; the primer and the probe are used for detecting a No. 9 exon of the c-KIT gene, wherein the primer sequence is as shown in SEQ ID NO: 9-10, and the probe sequence is as shown in SEQ ID NO: 11; the primer and the probe are used for detecting a No. 13 exon of the c-KIT gene, wherein the primer sequence is as shown in SEQ ID NO: 12-14, and the probe sequence is as shown in SEQ ID NO: 15; andthe primer and the probe are used for detecting a No. 17 exon of the c-KIT gene, wherein the primer sequence is as shown in SEQ ID NO: 16-19, and the probe sequence is as shown in SEQ ID NO: 20. Thedetecting kit and the detecting method are far more than similar products in detecting site number, complete in site, high in detecting sensitivity, strong in specificity, high in accuracy, low in cost, and capable of meeting clinical GIST targeted administration c-KIT mutation detection.

Description

technical field [0001] The invention relates to nucleic acid in vitro amplification detection in the field of biotechnology, in particular to a c-KIT somatic cell mutation gene detection kit and a detection method thereof. Background technique [0002] Gastrointestinal stromal tumor (GIST) is the most common mesenchymal tumor of the digestive tract, and it is also a model in tumor biological targeted therapy. The vast majority of GISTs express the Kit protein (CD117) encoded by the c-KIT gene. The c-KIT gene is located on human chromosome 4q12-13 and belongs to a proto-oncogene. Some GISTs have c-KIT gene mutations, which lead to the activation of kit protein without the participation of ligands to stimulate the continuous proliferation of tumor cells and the loss of control of anti-apoptotic signals. [0003] Imatinib (Gleevec) is a tyrosine kinase inhibitor approved by the FDA for the treatment of metastatic and surgically refractory cases, as well as postoperative preven...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6886C12N15/11
CPCC12Q1/6886C12Q2600/156
Inventor 王三张旭谭灏文
Owner PRIMBIO GENES BIOTECH WUHAN CO LTD
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