Real-time quantitative PCR detection method for ulva linza, hard ulva and scytosiphon lomentaria spores/gametes in holothurian culture water
A real-time quantitative technology for aquaculture water, applied in biochemical equipment and methods, determination/inspection of microorganisms, DNA/RNA fragments, etc. problems such as detection and dynamic monitoring, to achieve the effect of good application potential, high sensitivity and strong specificity
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Embodiment 1
[0030] Detection of algae spores / gametes in different seasons in sea cucumber culture water
[0031] The water body samples were collected from the Dongfang Ocean Sea Cucumber Breeding Base in Yunxi Village, Yantai City. After being pre-filtered through a sieve with a pore size of 200 μm, they were slowly filtered onto a cellulose acetate membrane with a pore size of 0.22 μm (diameter: 47 mm; Millipore, USA). Soil extraction kit (Mpbio, USA) was used to extract DNA.
[0032] The right end of the 18S rDNA sequence and the ITS sequence region of Ulva ulva, Ulva hardina and Hemerocallis were obtained from the Genbank database to search for species-specific primers covering part of the ITS region or the full length of the ITS region, respectively. Species of the same genus or family with a sequence similarity higher than 90% were selected as references to search for specific sites. Use the website of Intergrated DNA Technologies (http: / / sg.idtdna.com / site) to conduct online eval...
Embodiment 2
[0036] Comparison of algae spores / gametes in sea cucumber culture waters with or without moss outbreaks in the same season
[0037] The classification and identification of macroalgae, the design and verification of ITS region-specific primers, and the optimization of quantitative PCR conditions are the same as in Example 1.
[0038] Using the specific primers for the ITS region of three algae (Ulva ulva, Ulva hardina, and Hemerocarpus) and optimized quantitative PCR conditions, comparing sea cucumber culture waters in December 2014, December 2015, and March 2015 (moss outbreak) Algal spore / gamete counts between March 2016 (no moss outbreak). The results showed that the number of spores / gametes of Ulva feldspar and Ulva hardina was lower than the detection limit; in December 2014, the ITS rDNA copy number of H. 7 copy / mL, while the copy number of ITS rDNA in Hecrophyllum sp. in December 2015 was only about 3.0×10 6 copy / mL; the copy number of ITS rDNA in Hemerophyllum was as...
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