Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Primers for detecting influenza virus by RT-PCR and method for detecting influenza virus

An RT-PCR, influenza virus technology, applied in the field of RT-PCR detection technology, can solve the problems of time-consuming operation and high laboratory requirements, and achieve the effect of convenient application and simple operation

Inactive Publication Date: 2009-10-21
中国疾病预防控制中心病毒病预防控制所
View PDF0 Cites 11 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0007] The operation is time-consuming and takes 3 weeks, and the requirements for the laboratory are relatively high

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Primers for detecting influenza virus by RT-PCR and method for detecting influenza virus

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0043] Embodiment 1: Design and synthesis of influenza A virus H1N1RT-PCR oligonucleotide primers:

[0044] Download swine-origin influenza virus H1N1 and influenza A viruses H1N1, H3N2, H5N1 and other subtypes M gene and HA gene complete sequence, the software compares and analyzes the consistency of the M gene sequence of all influenza A viruses, and selects a relatively conserved region to design primers; swine H1N1, new type A H1N1 and seasonal influenza A All HA gene sequences of the virus H1N1 were compared together, and primers were selected for the conserved region and the variable region respectively. In primer design, 2 or less degenerate bases are allowed at the same variable site. Screen the extracted candidate primers that meet the following requirements: ①The probe length L is between 19~28bp; ②Tm value is between 42~59℃; ③GC% is between 25~75%; ④polyN≤4bp; ⑤Hairpin ≤4bp; ⑥ coverage >90%; ⑦ BLAST screening, specificity score > L×0.4. The optimal Tm value is se...

Embodiment 2

[0045] Embodiment two: the present invention detects the application example of unknown virus:

[0046] 1. Extraction of viral RNA:

[0047] Take 200 μL of virus sampling solution, add 500 μL of lysis solution, and extract 50 μL of viral RNA according to the instructions of RNeasy Mini Kit (Qiagen, catalog #74104).

[0048] 2. RT-PCR reaction:

[0049] 1) System configuration: use QIAGEN One step RT-PCR Kit (catalog#210212) reaction solution.

[0050]

[0051] 2) RT-PCR: put the reaction tube with the above reaction system in the PCR machine for RT-PCR, the reaction procedure is as follows

[0052] 60°C for 1 minute;

[0053] 42°C for 10 minutes;

[0054] 50°C for 30 minutes;

[0055] 95°C for 15 minutes;

[0056] Denaturation at 94°C for 30 seconds;

[0057] Anneal at 50°C for 30 seconds;

[0058]Extend at 72°C for 1 minute;

[0059] Go back to step 5, 34 cycles;

[0060] 72°C for 10 minutes;

[0061] Store at 4°C.

[0062] 3. Detection of RT-PCR products: Take...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

PropertyMeasurementUnit
cover factoraaaaaaaaaa
Login to View More

Abstract

The invention discloses primers for detecting influenza virus by RT-PCR and a method for detecting the influenza virus. The primers comprise three pairs of total six oligonucleotide primer sequences such as influenza A virus generality primer, influenza A H1N1 virus H1 generality primer, novel influenza A H1N1 virus H1 specificity primer and the like; and the invention simultaneously discloses treatment of a sample to be detected, an RT-PCR reaction system and reaction condition, and result analysis. The invention can quickly and effectively determine influenza A virus, influenza A H1N1 virus and novel influenza A H1N1 virus, and provide feasible technical support for influenza epidemic early warning mechanisms in the fields such as clinical diagnosis, inspection and quarantine and the like.

Description

technical field [0001] The invention relates to a RT-PCR detection technology, in particular to an influenza virus RT-PCR detection primer and a method for detecting influenza virus. Background technique [0002] The influenza virus genome consists of 8 negative-strand RNA segments. According to nucleoprotein (NP) and matrix protein (M), it is divided into A type, B type and C type. Type A influenza virus is divided into 16 HA subtypes and 9 NA subtypes according to the difference of surface hemagglutinin (HA) and neuraminidase (NA); type B and type C influenza viruses are not divided into subtypes. Type A often causes a worldwide pandemic; Type B and Type C are characterized by local outbreaks and sporadic epidemics. [0003] In March 2009, cases of Influenza A (H1N1) virus infection were discovered successively in Mexico and the United States. As of May 21, 2009, confirmed cases of Influenza A (H1N1) virus had appeared in 42 countries, and the number of confirmed cases w...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/68C12N15/11C12R1/93
Inventor 王伟舒跃龙温乐英李晓丹高荣保王大燕李德新
Owner 中国疾病预防控制中心病毒病预防控制所
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products