Molecular diagnosis of sex-linked dwarf chicken and its uses in dwarf chicken breeding
A small chicken and mutant technology, applied in the application field of dwarf chicken breeding, can solve the problems of the uniformity of the offspring, the lack of systematic establishment of detection, and the irregular production performance of the offspring, etc.
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Embodiment 1
[0035] The detection of embodiment 1 type II mutation:
[0036] Primers (reference sequence GeneBank accession number: AC187590):
[0037] 5'-GGCAGAAACCCCAAGTTATG-3'
[0038] 5'-TCGGGACAGATCAAAGACAAT-3'
[0039] PCR amplification conditions:
[0040] Due to the longer fragments, the PCR amplification conditions are different, and the denaturation, annealing, and extension times are all longer. The PCR reaction program: 94°C for 3min, 35 cycles (94°C for 45s, 56°C for 45s, 72°C for 2min), Extend for 10 min and store at 4°C. Table 2 is the reaction system of PCR.
[0041] Table 2 PCR reaction mixture system
[0042] Template DNA (2.5ng / μL)
[0043] The amplified product was electrophoresed on 1.0% agarose gel, and the size of the fragment formed after deletion was 253bp, while the size of the fragment without deletion was 2026bp, so the genotype can be directly judged according to the size of the product fragment. The test results are shown in Figure 1. Normal ch...
Embodiment 2
[0044] The detection of embodiment 2 I and type IV mutation:
[0045] Primer C: 5'-ACACATCCTACACCTCGATTTGG-3'
[0046] 5'-CGAAAGCTTACAGAATCACAC-3'
[0047] PCR reaction program: 94°C for 3min, 35 cycles (94°C for 30s, 58°C for 30s, 72°C for 30s), extension for 7min, and storage at 4°C. Table 3 is the reaction system of PCR.
[0048] Table 3 PCR reaction mixture system
[0049] ExTaq (5U / μL)
10×Ex Taq Buffer
dNTP Mixture (2.5mM each)
Template DNA (2.5ng / μL)
Upper Primer (25μM)
Lower Primer (25μM)
Sterile distilled water
0.125μL
2.5μL
2.5μL
1μL
0.5μL
0.5μL
Up to 25μL
[0050] Take 5 μL of PCR amplification product mixed with 2 μL of bromophenol blue, and use DNAMarker as a reference, the concentration of agarose gel is 1.0% (containing 0.5ug / mL EB dye), 1 × TAE as a buffer, The electrophoresis is about 45min, and the voltage is 4-5V / cm. After the electrophoresis is over, observe whether there is an amp...
Embodiment 3
[0063] The detection of embodiment 3 type III mutations:
[0064] Primer 5'-CCCAGGCTCTCAACAGTG-3'
[0065] 5'-TGAGTAAAGGAAACATAGAGG-3'
[0066] Amplification conditions, reaction system and genotype judgment are the same as the detection of I and IV mutations.
[0067] The detection results are shown in Figure 3, only one genotype appeared, and no mutation was found after being sent for sequencing, indicating that there was no mutation at this site in each chicken breed.
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