Plasma sample cancer early screening method based on ensemble learning
An integrated learning and cancer technology, applied in the field of early cancer screening of plasma samples based on integrated learning, can solve the problems of high cost, poor tolerance of detection methods, inability to effectively detect early cancer, etc., to achieve improved stability, stable prediction accuracy, The effect of optimizing model performance
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[0026] Source of original data: Circulating Tumor DNA (ctDNA) is one of the important detection objects of liquid biopsy. ctDNA methylation levels and associated DNA mutations (SNVs, INDELS, and copy number mutations) are important sources of liquid biopsy characteristics. Due to the low content of ctDNA released by early malignant tumors, improving the signal-to-noise ratio of DNA mutation detection and methylation monitoring is a key problem to be solved. In cell-free DNA (Cell-Free DNA, cfDNA), in addition to ctDNA, there are also a large number of DNA fragments from the hematopoietic system, which is the main source of noise data affecting ctDNA analysis.
[0027] 1. Data cleaning
[0028] In the present invention, the ctDNA in the plasma is used as a marker, the methylation level is used as a detection measurement value, and considering the influence of sample noise, the bias of sample distribution and other factors, a method for cleaning tumor marker data based on noise...
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